PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G01047.2.p
Common NameEUGRSUZ_G01047, LOC104452956
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 566aa    MW: 63596.1 Da    PI: 4.9366
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G01047.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.16.6e-31291563127
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgy.Wkatg 87 
                       +G+rFhPt+eel+ +yLk kv+g + ++  +i+++ +iy+++PwdLp+       ++++++ew+f +++ ++    +r +r+t  g+ Wk tg
  Eucgr.G01047.2.p  29 VGYRFHPTEEELI-NYLKSKVTGCRETF-CIIPTLeNIYEINPWDLPAkfnensIIRSKDQEWWFICPQTQN----QRISRKTPCGFsWKITG 115
                       7************.9*********9777.66888779**********63666665566999******98774....6999*9999999***** PP

               NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                       k+ ++++k +++++g k tLvf +gr++kg++++Wv+he++
  Eucgr.G01047.2.p 116 KHIDIKAKtDDKKIGSKITLVFIDGRNSKGTRSNWVLHEFH 156
                       *****99978899***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-3124162IPR003441NAC domain
PROSITE profilePS5100531.29927172IPR003441NAC domain
PfamPF023651.4E-1529156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MESRISPMNQ QPAEKVVTEI ALLLQQAIVG YRFHPTEEEL INYLKSKVTG CRETFCIIPT  60
LENIYEINPW DLPAKFNENS IIRSKDQEWW FICPQTQNQR ISRKTPCGFS WKITGKHIDI  120
KAKTDDKKIG SKITLVFIDG RNSKGTRSNW VLHEFHPHPD DTGFVIYCLK MKQNEKADNY  180
AAVATNGDFS STPQFQNHKV SFSEPNEVIS KLSDEVYSKS DGSYQNRTKS LALIQEDNHH  240
SSPNQEHLVG TKDPSSTENS SGRGLSVPDP TNDELNFPHP FLNVDVCSAN EADKETINQV  300
AELVRSTEEK VDEMSGEQAD KSCDSMDCDN PGQLLFAEHH VQEMQNELND LIMNGSSNEW  360
SRIEPSMSPL GHDLFPNGDL FGLNDRIRET GADIGVIQYG QLGETSWDNC WAKKNQRPVC  420
DTLEGAVPGE EKGFTEEKLN HPHDTEKIIT ECTSSDGAPA KGKAQAGEFK EKETTMIRPQ  480
EKNFEMKIES DNMFHGESWT ESLSPTRSIP STSCSCRNRP TIDPAVYFAR LMALVLVVGL  540
IVDGICRKSD GISEIKKVYV FYGRI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-153015620141NO APICAL MERISTEM PROTEIN
1ut4_B4e-153015620141NO APICAL MERISTEM PROTEIN
1ut7_A4e-153015620141NO APICAL MERISTEM PROTEIN
1ut7_B4e-153015620141NO APICAL MERISTEM PROTEIN
4dul_A4e-153015620141NAC domain-containing protein 19
4dul_B4e-153015620141NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G01047.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065754.10.0PREDICTED: NAC domain-containing protein 101 isoform X1
TrEMBLA0A059BBK50.0A0A059BBK5_EUCGR; Uncharacterized protein
STRINGXP_010065754.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.19e-24NAC domain containing protein 71