PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G01066.1.p
Common NameEUGRSUZ_G01066
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 215aa    MW: 24665.3 Da    PI: 8.7377
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G01066.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM122.92.7e-38101391128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka......eekewyfFskrdkkyatgkrknratksgyW 83 
                       lp G+rFhPtdeelv++yLk kv g++ ++  +i+evdi+k+ePw+Lpk    k  +      + +ew+fF+++        r +r+t  g+W
  Eucgr.G01066.1.p  10 LPIGYRFHPTDEELVDHYLKLKVLGSRGNI-CIIPEVDICKWEPWELPKifeeK--SivppddKVQEWWFFCPQTP------RIQRSTPLGFW 93 
                       699************************998.77***************745551..1455544666******9866......7899******* PP

               NAM  84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       k+tg d+++++  +++++g+kktLvf++g+ ++g  t+Wv+hey+l
  Eucgr.G01066.1.p  94 KKTGIDRTIKAGdRNREIGTKKTLVFHRGHGKRGIGTKWVIHEYHL 139
                       **********9867788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-416164IPR003441NAC domain
PROSITE profilePS5100542.7510164IPR003441NAC domain
PfamPF023653.2E-2311139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MATVIIPKNL PIGYRFHPTD EELVDHYLKL KVLGSRGNIC IIPEVDICKW EPWELPKIFE  60
EKSIVPPDDK VQEWWFFCPQ TPRIQRSTPL GFWKKTGIDR TIKAGDRNRE IGTKKTLVFH  120
RGHGKRGIGT KWVIHEYHLL TNNLNELFPR APTKNYLVCH LKHQGNEESD FSAQQLNGGA  180
ISSMDLDSGL HQPEHNNSFP EVRMKKCSVH GHSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-31916714171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G01066.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018733110.11e-140PREDICTED: uncharacterized protein LOC108961078
TrEMBLA0A059BC561e-159A0A059BC56_EUCGR; Uncharacterized protein
STRINGXP_010066077.11e-127(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.11e-44NAC 014