PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G01078.1.p
Common NameEUGRSUZ_G01078
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 250aa    MW: 27801 Da    PI: 7.3269
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G01078.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.53.7e-213211448128
               NAM  48 p.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       p +++ ++ +e++fF++rd+k +++ r++r+t+ g+Wk t k++ v +  +ge++g k++Lv+y+gr+ ++++t+  mhey+l
  Eucgr.G01078.1.p  32 PlSRIPSDGHECFFFCPRDNKIPNSLRSSRKTEFGFWKDTSKKRGVQAPgTGEEIGFKRILVYYEGRQGDARRTHFSMHEYHL 114
                       5446677889*************************************9988899****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.081137IPR003441NAC domain
PfamPF023651.9E-1120114IPR003441NAC domain
SuperFamilySSF1019416.67E-2537136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MAKGTQIQAD GERIRRPSLA KKAERRKGNY LPLSRIPSDG HECFFFCPRD NKIPNSLRSS  60
RKTEFGFWKD TSKKRGVQAP GTGEEIGFKR ILVYYEGRQG DARRTHFSMH EYHLKSNVSN  120
SEIPNPREFV LCHITNRKCE KAGSESAITS TGANLTIPST LSNSECEGAH DFSLQASPAV  180
TVESESSNHT MLNHGLPDHS AYVPQQPDML GMESSLHNDN WFVDGASDKH FALSCPPSDD  240
VIFLSDLWS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G01078.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018732477.11e-162PREDICTED: protein NTM1-like 9
TrEMBLA0A059BC670.0A0A059BC67_EUCGR; Uncharacterized protein
STRINGXP_010065781.11e-162(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.15e-21NAC transcription factor-like 9