PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G01083.1.p
Common NameEUGRSUZ_G01083
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 253aa    MW: 29000.7 Da    PI: 5.3721
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G01083.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1042e-3251332128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                       ++GfrF Pt+eel++ yL+ kv g    +  +i+e+ d y ++PwdLp       ++ ++  +wyfF+++   +++++r +r+t+sg Wk t 
  Eucgr.G01083.1.p   5 QVGFRFLPTEEELLNGYLTSKVLGYADGC--IIPELdDFYAWDPWDLPGlyqqisNIPSDGLDWYFFCPSPYLAQNSERVKRQTRSGKWKITC 95 
                       68***********************9777..7999989**********53554444444666******************************* PP

               NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++ e++++ ++ l+g+k++Lvf kgra    kt Wvmhey+l
  Eucgr.G01083.1.p  96 QKDEIKARdTKVLIGTKRILVFNKGRA----KTGWVMHEYHL 133
                       ******9956667**********8887....678*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-364157IPR003441NAC domain
PROSITE profilePS5100537.3854157IPR003441NAC domain
PfamPF023651.1E-216133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEQFQVGFRF LPTEEELLNG YLTSKVLGYA DGCIIPELDD FYAWDPWDLP GLYQQISNIP  60
SDGLDWYFFC PSPYLAQNSE RVKRQTRSGK WKITCQKDEI KARDTKVLIG TKRILVFNKG  120
RAKTGWVMHE YHLNPKLLNG YSSTFQIPYI LCRLKRKPSE SLDISPSFEG GSSVTYDSPV  180
ASQRELTEDS NQESSFQATA ESLLPFQTLD DNLPDYNSYG SFHPQPHLYD DGQVQFTKPI  240
VLITWRNKLT VQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-20716120169NO APICAL MERISTEM PROTEIN
1ut4_B4e-20716120169NO APICAL MERISTEM PROTEIN
1ut7_A4e-20716120169NO APICAL MERISTEM PROTEIN
1ut7_B4e-20716120169NO APICAL MERISTEM PROTEIN
4dul_A4e-20716120169NAC domain-containing protein 19
4dul_B4e-20716120169NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G01083.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010026029.11e-107PREDICTED: protein NTM1-like 9
TrEMBLA0A059BC720.0A0A059BC72_EUCGR; Uncharacterized protein
STRINGXP_010068322.11e-174(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16613212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.21e-37NAC transcription factor-like 9