PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G01185.1.p
Common NameEUGRSUZ_G01185
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 226aa    MW: 24996.5 Da    PI: 5.4056
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G01185.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.47.6e-232369147
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                      k+i nks +qvtfskRr g++KKA+EL++LC+a++a+i+fs+  k++
  Eucgr.G01185.1.p 23 KKITNKSSQQVTFSKRRSGLFKKASELCILCGAQIAIIVFSPVHKIF 69
                      689**************************************988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.5251575IPR002100Transcription factor, MADS-box
SMARTSM004325.2E-311574IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-271691IPR002100Transcription factor, MADS-box
CDDcd002654.28E-351683No hitNo description
PRINTSPR004044.1E-201737IPR002100Transcription factor, MADS-box
PfamPF003192.2E-232471IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-203752IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-205273IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVVVKKLTKT PKPSKGRKKI EIKKITNKSS QQVTFSKRRS GLFKKASELC ILCGAQIAII  60
VFSPVHKIFC FGYPNVDFVI DRYIRETSTD VPQDGGEDVA VDNIVPALHA LNEEYDGVLQ  120
ELARRERSSE ASGSGRFWWD KPLDDDMAAE ELEQYVVAVE ELMQKVAMKA DDMMMRSLLQ  180
PYGATVGTAV NAAEASDADM AVNHLVHENE GKFNDYGQIG GPGFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-1516109289MEF2C
5f28_B1e-1516109289MEF2C
5f28_C1e-1516109289MEF2C
5f28_D1e-1516109289MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G01185.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018733022.15e-92PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A059BBR51e-168A0A059BBR5_EUCGR; Uncharacterized protein
STRINGXP_010068351.11e-140(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-34AGAMOUS-like 62