PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G01234.1.p
Common NameEUGRSUZ_G01234
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 338aa    MW: 36503.9 Da    PI: 4.412
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G01234.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.5e-112633031055
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r+RR+riN+++ +L++l+P+      +K++ +++Le+Av+Y+k Lq
  Eucgr.G01234.1.p 263 RKRRERINERLRTLQTLIPNG-----TKVDISTMLEEAVQYVKFLQ 303
                       9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-14253318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.44253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-12258312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-12262307No hitNo description
PfamPF000101.7E-8263303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEPLGTVSEG EWSSLSGVYT TEEADFMAQL LNDWPLHANA KGGSKVSAQH GHWPSHESSI  60
DLPGVEGSSF CSTDVANNSS LQFFPQAINC NCGSSSIVFP PSGHENYYLS HPNEILANST  120
ELMNPGSFSL GWSNGLNQEM SDCNVEESGG GAPADGSLKI SVQPKGESEI SEREVAEEEN  180
NRDTIANARK RSRTTGNDEE DGDAQGNNQS SSTCCSEEES STSHEQNVAA ANASSKEPAA  240
VNLSSKTRAS RGSATDPQSL YARKRRERIN ERLRTLQTLI PNGTKVDIST MLEEAVQYVK  300
FLQLQIKLLS SDDLWMYAPI AYNGMDIGLD LKLNISR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G01234.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065900.10.0PREDICTED: transcription factor bHLH85
TrEMBLA0A059BBW40.0A0A059BBW4_EUCGR; Uncharacterized protein
STRINGXP_010065900.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.13e-46bHLH family protein