PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G01241.1.p
Common NameEUGRSUZ_G01241
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 146aa    MW: 16646.1 Da    PI: 10.5618
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G01241.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.36.4e-14261141298
                       HT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                B3  12 ks.grlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                       k+ + l++p kf+++h ++   +k++     s rsW vkli      +   +     +++GW  F+++ +L +g ++ F+l++r+e+ ++v++
  Eucgr.G01241.1.p  26 KQvATLRVPVKFVKQHLHE---NKQVATLRYSDRSWPVKLIRslgqAR---GapaLAFSTGWCVFARETDLHAGNVCSFELIDRDETVFKVSI 112
                       2246799******999543...23577777899*******77654333...24669999***********************99888889998 PP

                       E- CS
                B3  97 fr 98 
                       +r
  Eucgr.G01241.1.p 113 LR 114
                       87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.24E-1615114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.6316116IPR003340B3 DNA binding domain
SMARTSM010198.7E-717116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-1618114IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-1128114IPR003340B3 DNA binding domain
CDDcd100174.21E-1331114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MTSKFQHAHV QSVPVKFVKQ HLHENKQVAT LRVPVKFVKQ HLHENKQVAT LRYSDRSWPV  60
KLIRSLGQAR GAPALAFSTG WCVFARETDL HAGNVCSFEL IDRDETVFKV SILRGAGNDL  120
IHVNGDEHRK YYLRPLQHRN EIRGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G01241.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018733252.12e-67PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1
TrEMBLA0A059BD551e-104A0A059BD55_EUCGR; Uncharacterized protein
STRINGXP_010065901.11e-63(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14804415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-09B3 family protein