PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G01245.1.p
Common NameEUGRSUZ_G01245
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 340aa    MW: 39011.9 Da    PI: 8.9392
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G01245.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.72.8e-1534124298
                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       fk+   sd+l+sg l +pk+f++++g++   s  + l+ + g +W+++l  +k+ +  + l kGW++F +   +  g  +vFk++g+s+f   
  Eucgr.G01245.1.p  34 FKII-LSDTLESGKLGIPKSFLRRCGKD--LSNSVLLQVPGGSTWTIEL--EKCNNDmVSLWKGWQDFMEYYSIGHGHLIVFKYIGNSTF--G 119
                       4444.59******************977..8889***************..55555449999************************9888..6 PP

                       EEEE- CS
                B3  94 vkvfr 98 
                       + +f+
  Eucgr.G01245.1.p 120 IIIFD 124
                       66666 PP
2B366.24.9e-21231328197
                       EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesg....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                       ffkv++++++lk+++l++p++f+ +h  ++    k++ +   sg    rsW +kl   k++ + ++++GW  F+++n L +gD+++F+l++r+
  Eucgr.G01245.1.p 231 FFKVMMQPSYLKHHILYVPRRFIMQHiRKI----KEIAILRHSGryldRSWPLKLLRYKQDHKAFFSGGWPAFARENCLHVGDVCMFELIDRE 319
                       9**********************9995433....367788888889*********778888889***************************** PP

                       EE..EEEEE CS
                B3  89 efelvvkvf 97 
                       +f + v++f
  Eucgr.G01245.1.p 320 DFVFEVSIF 328
                       **8888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.3E-2129126IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-2130126IPR015300DNA-binding pseudobarrel domain
CDDcd100174.89E-1731124No hitNo description
PROSITE profilePS5086313.05632126IPR003340B3 DNA binding domain
SMARTSM010193.8E-1533126IPR003340B3 DNA binding domain
PfamPF023624.7E-1334124IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-22223331IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-22225330IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-16231331IPR003340B3 DNA binding domain
PROSITE profilePS5086313.888231331IPR003340B3 DNA binding domain
CDDcd100174.80E-22231329No hitNo description
PfamPF023628.2E-19231328IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MASCSRRRRR RRREDGAVEP EVVAGRCRES RCFFKIILSD TLESGKLGIP KSFLRRCGKD  60
LSNSVLLQVP GGSTWTIELE KCNNDMVSLW KGWQDFMEYY SIGHGHLIVF KYIGNSTFGI  120
IIFDKSTSEI DYSLSSGKKT DLGSKFPSPK TEDVVEAEDP EELITRRKMR VESHLPYSQL  180
SPIYSPRGSK DGIRRSRCKM NHSEPFFGGP TCIGPLSGFE LASEFESEYP FFKVMMQPSY  240
LKHHILYVPR RFIMQHIRKI KEIAILRHSG RYLDRSWPLK LLRYKQDHKA FFSGGWPAFA  300
RENCLHVGDV CMFELIDRED FVFEVSIFCS AGTGPILTD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A6e-1422232839140B3 domain-containing transcription factor VRN1
4i1k_B6e-1422232839140B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1512RRRRRRRR
2612RRRRRRR
3613RRRRRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G01245.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065905.20.0PREDICTED: B3 domain-containing protein LOC_Os12g40080 isoform X1
RefseqXP_018733251.10.0PREDICTED: B3 domain-containing protein LOC_Os12g40080 isoform X3
TrEMBLA0A059BBK80.0A0A059BBK8_EUCGR; Uncharacterized protein
STRINGXP_010065905.11e-144(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-38B3 family protein