PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G01246.1.p
Common NameEUGRSUZ_G01246
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 111aa    MW: 12549.5 Da    PI: 8.2322
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G01246.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3438.4e-149961494
                      T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE............EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                B3 14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkl.iy.........rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                      ++l+lp  f+++h +++  ++  +     sg+sW vkl +y           ++ r+++t+GW  F+++ +++ g  +vF+l++r++  + v
  Eucgr.G01246.1.p  9 NCLSLPVGFIKQHiQEN--KG--MATLRFSGESWPVKLlSYtqtrkilsgYTHDTRVFFTTGWTAFARETHMRMGNLCVFELIDRDDVVFQV 96
                      459*******9994333..33..666778*********544888888877677777***************************987773444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.4061102IPR003340B3 DNA binding domain
SuperFamilySSF1019361.0E-143100IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-156101IPR015300DNA-binding pseudobarrel domain
CDDcd100175.28E-126100No hitNo description
PfamPF023621.3E-11996IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MVIPPSYMNC LSLPVGFIKQ HIQENKGMAT LRFSGESWPV KLLSYTQTRK ILSGYTHDTR  60
VFFTTGWTAF ARETHMRMGN LCVFELIDRD DVVFQVSNFS SAGKEPIPID *
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G01246.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065905.23e-66PREDICTED: B3 domain-containing protein LOC_Os12g40080 isoform X1
RefseqXP_018733250.12e-66PREDICTED: B3 domain-containing protein LOC_Os12g40080 isoform X2
TrEMBLA0A059BBX35e-78A0A059BBX3_EUCGR; Uncharacterized protein
STRINGXP_010065905.13e-66(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14804415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.16e-11related to vernalization1 1