PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.G01261.1.p

Common Name

EUGRSUZ_G01261, LOC104453101

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LBD

Protein Properties

Length: 224aa MW: 24302.7 Da PI: 8.6408

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.G01261.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	90.8	1.7e-28	2	102	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C++ C+l++++ p++q++++ +v+k+FG++ ++++++a+p ++r ++++sl++eA r+ +Pv Gavg+i++++++l+ Eucgr.G01261.1.p 2 SCNGCRVLRKGCSDTCMLRQCLqlidsPQAQAHATLFVAKFFGRAALMSFVSAVPASHRAALFQSLLFEAVGRTVNPVGGAVGLIWAGNWRLC 94 6******************************************************************************************** PP DUF260 89 qlkaelal 96 +++++++l Eucgr.G01261.1.p 95 EAAVDTVL 102 *9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.577	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-24	2	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MSCNGCRVLR KGCSDTCMLR QCLQLIDSPQ AQAHATLFVA KFFGRAALMS FVSAVPASHR 60 AALFQSLLFE AVGRTVNPVG GAVGLIWAGN WRLCEAAVDT VLRGGAPHAL LEPADAVPSF 120 ELDRSSVSEA DHFRPRSPPS PPPPPPPPPP RHPQPPRDEP TKAGEDRLDL SLMSPDLRRR 180 RRRRPATPSE EGEESETTTA TWRSGSSEGG WPRQDAKLLR LFV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	184	LRRRRRRRP
2	177	183	RRRRRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.G01261.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010065916.1	1e-159	PREDICTED: LOB domain-containing protein 37
TrEMBL	A0A059BBY2	1e-158	A0A059BBY2_EUCGR; Uncharacterized protein
STRING	XP_010065916.1	1e-159	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM821	28	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	2e-56	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	Eucgr.G01261.1.p
Entrez Gene	104453101