PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G01493.1.p
Common NameEUGRSUZ_G01493
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 297aa    MW: 32767.1 Da    PI: 8.8495
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G01493.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-1295138855
                       HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        Er RR+++++ f++L  llP+ +     +K +K++i+ +Av+YIk+L+
  Eucgr.G01493.1.p  95 TERERRKKMRNMFANLHALLPHiP-----PKADKSTIVDEAVNYIKNLE 138
                       6*********************88.....8****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.68787137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1590153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-1491150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.13E-1292142No hitNo description
SMARTSM003532.1E-795143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-995138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.70E-4228262No hitNo description
PROSITE profilePS516718.841228296IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MSEGGDHVAF PWKNPTWDFA KPDNSSNVGD RLGKKTACSS SHAQTAVEKE LRPVPTRKRS  60
RDMIKEGEDK NGKGELAANG AKTVGESDHE IHIWTERERR KKMRNMFANL HALLPHIPPK  120
ADKSTIVDEA VNYIKNLENT LQNLQKQKQE KYHCTAIFNC EPSTVVNSQS LASDSREAFL  180
ASQGSAAGNL PISAASSSAS SPVFRHPIAF QTWSSPNVVL NICGDEAMIS VCSPKKPGLF  240
TAICYVLEKH KIQVVSAQVS SDYSRSLYMI QAQFIKASKC EAEVKPERDE KVHFKP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that controls embryo growth (PubMed:18567831, PubMed:18849529, PubMed:23318634). Regulates endosperm breakdown and embryonic epidermal development. Regulates the expression of SBT2.4/ALE1 (PubMed:18849529, PubMed:23318634). Involved in embryonic cuticle formation upstream of SBT2.4/ALE1 (PubMed:23318634). Does not seem to be a general regulator of endosperm patterning. May control specific signaling pathways that coordinate embryo invasion and breakdown of surrounding endosperm tissues (PubMed:18849529). Required for the production the embryo sheath, an extracuticular endosperm-derived structure at the surface of the embryo. Acts upstream of KRS (PubMed:28696222). {ECO:0000269|PubMed:18567831, ECO:0000269|PubMed:18849529, ECO:0000269|PubMed:23318634, ECO:0000269|PubMed:28696222}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G01493.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010068480.10.0PREDICTED: transcription factor bHLH95
SwissprotQ9FXA33e-52BH095_ARATH; Transcription factor bHLH95
TrEMBLA0A059BC710.0A0A059BC71_EUCGR; Uncharacterized protein
STRINGXP_010068480.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50742549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhang Y, et al.
    Reduced function of the RNA-binding protein FPA rescues a T-DNA insertion mutant in the Arabidopsis ZHOUPI gene by promoting transcriptional read-through.
    Plant Mol. Biol., 2016. 91(4-5): p. 549-61
    [PMID:27164978]
  3. Fourquin C, et al.
    Mechanical stress mediated by both endosperm softening and embryo growth underlies endosperm elimination in Arabidopsis seeds.
    Development, 2016. 143(18): p. 3300-5
    [PMID:27287798]
  4. Du Q,Wang H
    Retarded Embryo Development 1 (RED1) regulates embryo development, seed maturation and plant growth in Arabidopsis.
    J Genet Genomics, 2016. 43(7): p. 439-49
    [PMID:27477025]
  5. Moussu S, et al.
    ZHOUPI and KERBEROS Mediate Embryo/Endosperm Separation by Promoting the Formation of an Extracuticular Sheath at the Embryo Surface.
    Plant Cell, 2017. 29(7): p. 1642-1656
    [PMID:28696222]