PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G01551.1.p
Common NameEUGRSUZ_G01060, LOC104452963
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 142aa    MW: 16691.2 Da    PI: 8.6255
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G01551.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM121.38.7e-38101381128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk........kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                       lp G+rFhPtdee v++yL+++v g   +   +i++vdi++++Pw+Lp+        + + + +ew+ ++ +       ++ +r+t sgyWk+
  Eucgr.G01551.1.p  10 LPIGYRFHPTDEEFVDHYLTNRVLGIVEDP-CIIPDVDICRWDPWELPQkfhgesiiRPDDKVQEWWCYCLQTP-----QQVKRTTPSGYWKK 96 
                       699*********************998666.57***************6466655443333667******9866.....5789********** PP

               NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       tg d++v++ ++ ++g+kktLvf+  + +kg+kt+Wv+hey+l
  Eucgr.G01551.1.p  97 TGPDRNVKA-RDIKIGTKKTLVFHIRQGSKGVKTNWVIHEYHL 138
                       ********9.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-405140IPR003441NAC domain
PROSITE profilePS5100536.62910142IPR003441NAC domain
PfamPF023659.8E-2311138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MGAVIIPQNL PIGYRFHPTD EEFVDHYLTN RVLGIVEDPC IIPDVDICRW DPWELPQKFH  60
GESIIRPDDK VQEWWCYCLQ TPQQVKRTTP SGYWKKTGPD RNVKARDIKI GTKKTLVFHI  120
RQGSKGVKTN WVIHEYHLLI KN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-27913814140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G01551.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066085.11e-106PREDICTED: NAC domain-containing protein 37
TrEMBLA0A059BC531e-102A0A059BC53_EUCGR; Uncharacterized protein
STRINGXP_010066085.11e-105(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3528322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.34e-40NAC transcription factor-like 9