PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G01722.1.p
Common NameEUGRSUZ_G01722, LOC104453374
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GATA
Protein Properties Length: 349aa    MW: 38181.2 Da    PI: 4.8101
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G01722.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA581.3e-18262295134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       Cs+C++ kTp+WR gp g ktLCnaCG++y++ +
  Eucgr.G01722.1.p 262 CSHCHVQKTPQWRAGPLGLKTLCNACGVRYKSGR 295
                       *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.3E-7125346IPR016679Transcription factor, GATA, plant
SMARTSM004011.2E-13256306IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-14257318No hitNo description
Gene3DG3DSA:3.30.50.101.3E-14260293IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.292260292IPR000679Zinc finger, GATA-type
CDDcd002024.16E-13261310No hitNo description
PfamPF003203.0E-16262295IPR000679Zinc finger, GATA-type
PROSITE patternPS003440262287IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MESSSIVERA LKSSFRSKTE EGQYVAVEDC LLGHGGVSLV ACNDDFVVDD WFDFSNEDGE  60
VEEEEGGGGG GGGDEEDDGA EVPKDSSLSV SSQAGDDDCS NLSSSPSASS EPILTSELTV  120
PDDDDIAELE WLSQFVDDDS LPEFPTCYLP GKWEQESSAK NRSEPEPRSV LIRPLCFPSP  180
VPVKTRTKRT RHAKKDQPPS SESSSTSSCS SENSSSSCLS FTSVLTSMEF VRSQSEPEKK  240
KKMKKTREPP VQDGPVQFQR RCSHCHVQKT PQWRAGPLGL KTLCNACGVR YKSGRLFPEY  300
RPACSPTFSV EAHSNSHRKV LEMRKRKEMA GNGIEGGRLK LNRMVTSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G01722.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018715361.10.0PREDICTED: GATA transcription factor 6
TrEMBLA0A059BCW50.0A0A059BCW5_EUCGR; GATA transcription factor
STRINGXP_010066212.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57392647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.29e-40GATA transcription factor 5