PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.G01984.1.p

Common Name

EUGRSUZ_G01984

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 242aa MW: 28003.6 Da PI: 6.5119

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.G01984.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	96.5	4.1e-30	5	140	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk.............kvkaeekewyfFskrdkkyatgkrknratks 80 ++G+rF+Pt+eel++++L +kv g + ++ +++e+ d y ++PwdLp+ +v ++ +wyf +++ +++++r +r+t+s Eucgr.G01984.1.p 5 QVGYRFSPTEEELINDHLMRKVLGYTDHC--IVPELeDFYAWDPWDLPRvhqgeflspsqisNVPSDGWDWYFLCPSPYLAQNSERIKRKTSS 95 58**********************888..566666*******55788888887555444466699****************** PP NAM 81 gyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 g Wk t + e++++ ++ l+g k++L+fy ++ +kt W++hey+l Eucgr.G01984.1.p 96 GNWKITSQRDEIKTRdTRVLIGSKRILTFY----KNRVKTGWILHEYHL 140 *********9956667******....344799******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-32	4	176	IPR003441	NAC domain
PROSITE profile	PS51005	33.676	4	177	IPR003441	NAC domain
Pfam	PF02365	6.8E-20	6	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MEQFQVGYRF SPTEEELIND HLMRKVLGYT DHCIVPELED FYAWDPWDLP RVHQGEFLSP 60 SQISNVPSDG WDWYFLCPSP YLAQNSERIK RKTSSGNWKI TSQRDEIKTR DTRVLIGSKR 120 ILTFYKNRVK TGWILHEYHL NHKLLDGYSS TLQKEKDKPI TSLHHVIPYV LCRLKRKPGE 180 SFDISPSFEE GDSSVTDDPP VAAQHESTED TDQEVSNPKD PNLLSIKIMF HALSTSRLIP 240 K*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-16	7	140	20	142	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-16	7	140	20	142	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-16	7	140	20	142	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-16	7	140	20	142	NO APICAL MERISTEM PROTEIN
3swm_A	7e-16	7	140	23	145	NAC domain-containing protein 19
3swm_B	7e-16	7	140	23	145	NAC domain-containing protein 19
3swm_C	7e-16	7	140	23	145	NAC domain-containing protein 19
3swm_D	7e-16	7	140	23	145	NAC domain-containing protein 19
3swp_A	7e-16	7	140	23	145	NAC domain-containing protein 19
3swp_B	7e-16	7	140	23	145	NAC domain-containing protein 19
3swp_C	7e-16	7	140	23	145	NAC domain-containing protein 19
3swp_D	7e-16	7	140	23	145	NAC domain-containing protein 19
4dul_A	7e-16	7	140	20	142	NAC domain-containing protein 19
4dul_B	7e-16	7	140	20	142	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.G01984.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010026029.1	4e-81	PREDICTED: protein NTM1-like 9
TrEMBL	A0A059BFB2	1e-179	A0A059BFB2_EUCGR; Uncharacterized protein
STRING	XP_010068654.1	1e-137	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16613	2	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.3	1e-30	NAC transcription factor-like 9

Link Out ? help Back to Top
Phytozome	Eucgr.G01984.1.p