PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G02040.1.p
Common NameEUGRSUZ_G02040, LOC104453609
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 639aa    MW: 69648.1 Da    PI: 9.2996
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G02040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-0590112123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ C+k F r  nL+ H r H
  Eucgr.G02040.1.p  90 FVCEVCKKGFQREQNLQLHRRGH 112
                       89*******************88 PP
2zf-C2H2130.00031168190123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC++C+k++  +s+ k H +t+
  Eucgr.G02040.1.p 168 WKCEKCSKRYAVQSDWKAHSKTC 190
                       58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.44E-789112No hitNo description
Gene3DG3DSA:3.30.160.605.4E-589112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.009690112IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78390112IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SMARTSM00355130133163IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.4E-5156189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.44E-7163188No hitNo description
SMARTSM00355130168188IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MAASSSSVPP FYRIQEGGDQ LIQMEQHRHA QMEQHRHAPS APLASSAAAS APPAPAPAPQ  60
KKKRNQPGNP YPDAEVIALS PKSLMATNRF VCEVCKKGFQ REQNLQLHRR GHNLPWKLKQ  120
KGTNKEAVRR KVYLCPEPTC VHHDPSRALG DLTGIKKHYS RKHGEKKWKC EKCSKRYAVQ  180
SDWKAHSKTC GTREYRCDCG TLFSRRDSFI THRAFCDALA QENARHPPTL NSIGNHSIYG  240
STNMGLGLSQ ANRQIPSMMQ GQGINHSNNN DISPLGRARS GQLFDHLLAP SIGTASSTFN  300
QPLPSMGSPS PNSFLFQAQS NQSYNSQEQA SPQQGLLQNK PFHGLMMQQM IPDHVKSNNN  360
NPSPSSSVAN IFNLGMLSSS SSNSNNNSSS TSSLLNSGLL VPDQHRFKSE IGSEGSNLLP  420
RSIPDDHHQI SSSGVPSLYS TSLLQTGNHH DFSPPHMSAT ALLQKAAQMG SSTSRTNTNN  480
NASFLKTFAS YSSSSGTKSD RSPLAPVSFT GIFGVDNNLQ ELVNCAFGGG QDHHQESAGD  540
AYDGMYDNAN KTGSEQSTTT HMGQHGLTRD FLGVGEIVRR VSNNVNNNGN NGGFMDVQRE  600
DDQRRQNQEK YGLMISDDKA ISSSLDSAPT SQTFGDFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34164225364Zinc finger protein JACKDAW
5b3h_F1e-34164225364Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G02040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066516.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic
RefseqXP_018715245.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic
TrEMBLA0A059BE170.0A0A059BE17_EUCGR; Uncharacterized protein
STRINGXP_010066516.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43732654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-110indeterminate(ID)-domain 5