PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G02068.1.p
Common NameEUGRSUZ_G02068
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ZF-HD
Protein Properties Length: 173aa    MW: 19774.3 Da    PI: 7.8895
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G02068.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer765.4e-24253257
       ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                      ++v Y+eCl+NhAa+lG + vDGC E+ p+      +a l CaACgCHRn+HR+ +
  Eucgr.G02068.1.p  2 QRVAYNECLHNHAANLGRYMVDGCHEYSPK----IISADLLCAACGCHRNYHRKVT 53
                      6899*************************9....45789**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.7E-20453IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152319.634652IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-10651IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-17651IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.4E-15105171IPR009057Homeodomain-like
SuperFamilySSF466895.54E-10106172IPR009057Homeodomain-like
TIGRFAMsTIGR015654.2E-18111169IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MQRVAYNECL HNHAANLGRY MVDGCHEYSP KIISADLLCA ACGCHRNYHR KVTIFDPDNT  60
EASGNHSPGD HNLITPKEES FDHEAVPPMI GTGGEDERLN QLVDPAQHEK KKRPKSRFTK  120
EQVEQMRAFA ENLGWSTRDR SRVPEIMVFC ASMGITKVVF TTWLYNNKKH YGR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00143DAPTransfer from AT1G14687Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G02068.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010068685.11e-132PREDICTED: zinc-finger homeodomain protein 10
TrEMBLA0A059BFM21e-130A0A059BFM2_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010068685.11e-131(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137282124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14687.12e-31homeobox protein 32