PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.G02321.1.p

Common Name

EUGRSUZ_G02321

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LBD

Protein Properties

Length: 216aa MW: 23428.5 Da PI: 7.8276

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.G02321.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.9	1.8e-29	4	106	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C++dCv++p++ +++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ + Eucgr.G02321.1.p 4 SCNGCRVLRKGCSDDCVIRPCLqwiksADSQAHATVFLAKFYGRAGLINLINAGPPHLRPAIFKSLLYEACGRIINPIYGSVGLLWSGNWGHC 96 6*******************9999667889********************************************************* PP DUF260 89 qlkaelallk 98 q++++++l++ Eucgr.G02321.1.p 97 QAAVDAVLRG 106 99988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.19	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.3E-24	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSDDCV IRPCLQWIKS ADSQAHATVF LAKFYGRAGL INLINAGPPH 60 LRPAIFKSLL YEACGRIINP IYGSVGLLWS GNWGHCQAAV DAVLRGSSHI MRHPSLDSGS 120 TPAASQPHPA LKAYDIRHFP KAGGSQGLHR ARFKRPRLGV DLKPDGWPHP EASYSTSPED 180 DSVFSVETVE AEPEGPSQPS QILAFDGQGG ESDEDR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.G02321.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010066723.1	1e-160	PREDICTED: LOB domain-containing protein 42
Swissprot	Q9CA30	1e-70	LBD42_ARATH; LOB domain-containing protein 42
TrEMBL	A0A059BF38	1e-159	A0A059BF38_EUCGR; Uncharacterized protein (Fragment)
STRING	XP_010066723.1	1e-160	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8463	26	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68510.1	6e-73	LOB domain-containing protein 42

Link Out ? help Back to Top
Phytozome	Eucgr.G02321.1.p