PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G02326.1.p
Common NameEUGRSUZ_G02326, LOC104453801
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 318aa    MW: 35812.7 Da    PI: 4.676
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G02326.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.3e-20118169155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s ykGVr++k +g+W+AeIrdp+   k  r++lg+f+t++eAaka+++ r+++e 
  Eucgr.G02326.1.p 118 SPYKGVRQRK-WGKWAAEIRDPRR--KGSRIWLGTFDTPQEAAKAYENKRLEFEA 169
                       68*******9.**********833..34***********************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-18118167IPR016177DNA-binding domain
PROSITE profilePS5103221.035119184IPR001471AP2/ERF domain
SMARTSM003801.9E-19119174IPR001471AP2/ERF domain
CDDcd000183.56E-21120160No hitNo description
PfamPF008476.0E-14120169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-24120173IPR001471AP2/ERF domain
PRINTSPR003672.7E-10120131IPR001471AP2/ERF domain
PRINTSPR003672.7E-10143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MPEPVIQPLD HNNLLKKPRK MTRITVDSRR VRKIRIFCRD PEATDDSSSE DESDHHRKGD  60
AKLFVREINL PLVSTHRASD LPSESSCQDS NNGFKSLEKK RKASPKGAAG TKRRACNSPY  120
KGVRQRKWGK WAAEIRDPRR KGSRIWLGTF DTPQEAAKAY ENKRLEFEAA KAEEASFSHS  180
LNRPSTSEDT ESVLSHTSPA SVLDLDTTAS NSTKEATADA NEENMERPCL ELIEEEPLIS  240
LDDVAIQDFY PGEDIDSLFK DDFGGFVDDD IWGFGDIPLC GFDKNKLIEL PDYDFELEDD  300
EFGHWIDEPP PLNIACP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-15120172355ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-14120172658ATERF1
3gcc_A1e-14120172658ATERF1
5wx9_A2e-141151851079Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G02326.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066728.10.0PREDICTED: ethylene-responsive transcription factor ERF118
TrEMBLA0A059BFB50.0A0A059BFB5_EUCGR; Uncharacterized protein
STRINGXP_010066728.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.26e-22ERF family protein