PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.G02341.1.p

Common Name

EUGRSUZ_G02341, LOC104453810

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bZIP

Protein Properties

Length: 486aa MW: 53067.8 Da PI: 7.0949

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.G02341.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.9	5.8e-10	186	217	3	34
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeek 34 ++k rr+++NReAA++sR+RKka++++Le+ Eucgr.G02341.1.p 186 DVKTLRRLAQNREAAKKSRLRKKAYVQQLENS 217 57899*************************84 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-5	184	259	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.91	186	230	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.1E-7	187	217	IPR004827	Basic-leucine zipper domain
CDD	cd14708	3.28E-21	188	240	No hit	No description
SuperFamily	SSF57959	2.41E-6	188	231	No hit	No description
Gene3D	G3DSA:1.20.5.170	8.8E-7	190	222	No hit	No description
PROSITE pattern	PS00036	0	191	206	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.2E-27	275	348	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence Send to blast
MQSFKAAPPT NPDIYCPASF FLRGGDVMSR NQTRFPDLGE LEQSVAAFHH EDAVDLSPSS 60 AFSLKPNNSI AFVANNLSYG GLNPCMSSSG VVTVSSGGGG GGGGGGGGCV EMGEIYEKGG 120 GNGGSLGNVQ GIENWADSGM AAPDNSQQTD TSTDVDTDDK RHFYRVQRGA LVAVDSADQS 180 KMRMSDVKTL RRLAQNREAA KKSRLRKKAY VQQLENSRFR LMQLEQELQR ARQQGIFVSS 240 GNPGDLSHNM AAIGNGAMAF DTDYARWLDE HQRLINDLRS GVNSQLNDNE LRMRVDAVMV 300 HHDQIFRLKN IGAKADVFHI LSGMWKTPAE RCFMWLGGFR SSELLKILGN HLEPLTDQQL 360 MGICNLQQSS QQAEDALSQG MEALQQSLVD TLSSTTLSPT GSGNVAEYMG QMAIAMGKLA 420 TLENFVHQAD LLRQQTLQQM HRILTTRQAA RALLVINDYI SRLRALSSLW LARPRTENIC 480 SAKLF*

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence Send to blast

MQSFKAAPPT NPDIYCPASF FLRGGDVMSR NQTRFPDLGE LEQSVAAFHH EDAVDLSPSS  60
AFSLKPNNSI AFVANNLSYG GLNPCMSSSG VVTVSSGGGG GGGGGGGGCV EMGEIYEKGG  120
GNGGSLGNVQ GIENWADSGM AAPDNSQQTD TSTDVDTDDK RHFYRVQRGA LVAVDSADQS  180
KMRMSDVKTL RRLAQNREAA KKSRLRKKAY VQQLENSRFR LMQLEQELQR ARQQGIFVSS  240
GNPGDLSHNM AAIGNGAMAF DTDYARWLDE HQRLINDLRS GVNSQLNDNE LRMRVDAVMV  300
HHDQIFRLKN IGAKADVFHI LSGMWKTPAE RCFMWLGGFR SSELLKILGN HLEPLTDQQL  360
MGICNLQQSS QQAEDALSQG MEALQQSLVD TLSSTTLSPT GSGNVAEYMG QMAIAMGKLA  420
TLENFVHQAD LLRQQTLQQM HRILTTRQAA RALLVINDYI SRLRALSSLW LARPRTENIC  480
SAKLF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.G02341.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010066737.1	0.0	PREDICTED: transcription factor TGA2.3
Swissprot	Q9SX27	1e-177	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	A0A059BF59	0.0	A0A059BF59_EUCGR; Uncharacterized protein
STRING	XP_010066737.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM667	28	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-139	bZIP family protein

Link Out ? help Back to Top
Phytozome	Eucgr.G02341.1.p
Entrez Gene	104453810

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]