PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.G02351.1.p

Common Name

EUGRSUZ_G02351, LOC104453821

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 365aa MW: 40068 Da PI: 6.5852

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.G02351.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.8	2.3e-14	171	217	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L Eucgr.G02351.1.p 171 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 217 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.907	168	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.0E-12	171	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-14	172	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-14	172	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.3E-13	174	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.96E-5	181	220	No hit	No description
Gene3D	G3DSA:3.30.70.260	1.6E-4	255	306	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MSGKIEEDQG ECSQTINNFH NTPHHLQDHY HHQQQLLLQM HHHHQNDHTF GGAVFHPDLQ 60 VPPSVLPWPL PQPHPAFHPV REPDPFLLPP PPPLPPSPYG GFFNRRAPPL QFAYDGGPAS 120 DHLRILSDAL AAGAAGHPGA TGAVAPFGLQ AELGKMTAQE IMDAKALAAS KSHSEAERRR 180 RERINNHLAK LRSLLPSTTK TDKASLLAEV IQHVKELKRQ TSLIAETSPI PTETDELTVD 240 TSDEEVDGKL VIKASLCCED RSDLLPDLIK TLKALRLRTL KAEITTLGGR VRNVLFVTGD 300 HDQDLSGDIG EHQEQQQQIQ QYSISSIQEA LKGVIEKAGG GDESSSGNVK RQRTNVNILE 360 HRSL*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MSGKIEEDQG ECSQTINNFH NTPHHLQDHY HHQQQLLLQM HHHHQNDHTF GGAVFHPDLQ  60
VPPSVLPWPL PQPHPAFHPV REPDPFLLPP PPPLPPSPYG GFFNRRAPPL QFAYDGGPAS  120
DHLRILSDAL AAGAAGHPGA TGAVAPFGLQ AELGKMTAQE IMDAKALAAS KSHSEAERRR  180
RERINNHLAK LRSLLPSTTK TDKASLLAEV IQHVKELKRQ TSLIAETSPI PTETDELTVD  240
TSDEEVDGKL VIKASLCCED RSDLLPDLIK TLKALRLRTL KAEITTLGGR VRNVLFVTGD  300
HDQDLSGDIG EHQEQQQQIQ QYSISSIQEA LKGVIEKAGG GDESSSGNVK RQRTNVNILE  360
HRSL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	181	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.G02351.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010066748.1	0.0	PREDICTED: transcription factor bHLH30
Swissprot	Q9S7Y1	1e-97	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A059BEY1	0.0	A0A059BEY1_EUCGR; Uncharacterized protein
STRING	XP_010066748.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7048	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	5e-73	bHLH family protein

Link Out ? help Back to Top
Phytozome	Eucgr.G02351.1.p
Entrez Gene	104453821

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]