PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.G02354.1.p

Common Name

EUGRSUZ_G02354

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

TCP

Protein Properties

Length: 194aa MW: 21807.4 Da PI: 10.3291

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.G02354.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.7	1e-38	31	151	2	132
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaks 93 +gkkdrhski T +g+RdRR+Rls+++ ++fF Lqd+LGfdk+sktieWLl ++ +ike +g + +++++c + ++a+++ Eucgr.G02354.1.p 31 TGKKDRHSKIRTVQGLRDRRIRLSVQVSRKFFGLQDMLGFDKASKTIEWLLSKSRNSIKEVVGRNITKQKDCgG---D--------VKAAQAE 112 79**************************************************************9999999921...2........2223333 PP TCP 94 aakskksqksaasalnlakesrakarararertrekmri 132 a+ +++++++ ++ ++ k+ a++r++arer rek+ + Eucgr.G02354.1.p 113 AEAEHEQEQDVSNRKEKIKSCDARERENARERAREKNPN 151 446667777777777888888888888888888888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.0E-33	31	98	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.048	33	91	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
TTPPKSRVDA NGVRVADPAK NKKALPRKRN TGKKDRHSKI RTVQGLRDRR IRLSVQVSRK 60 FFGLQDMLGF DKASKTIEWL LSKSRNSIKE VVGRNITKQK DCGGDVKAAQ AEAEAEHEQE 120 QDVSNRKEKI KSCDAREREN ARERAREKNP NASVFSGADG LCAHQQPINN DDSAQEYGQF 180 ASEMDDSLSM IDKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.G02354.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010068762.1	1e-140	PREDICTED: transcription factor TCP12
TrEMBL	A0A059BGH1	1e-140	A0A059BGH1_EUCGR; Uncharacterized protein (Fragment)
STRING	XP_010068762.1	1e-139	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11632	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	1e-27	TCP family protein

Link Out ? help Back to Top
Phytozome	Eucgr.G02354.1.p