PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G02427.1.p
Common NameEUGRSUZ_G02427, LOC104453879
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 28591.7 Da    PI: 8.2867
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G02427.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.11.7e-31959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krienk+nrqvtf+kR+ng+lKKA+ELSvLCdaeva+iifss+gkl+e++s
  Eucgr.G02427.1.p  9 KRIENKINRQVTFAKRKNGLLKKAYELSVLCDAEVALIIFSSRGKLHEFCS 59
                      79***********************************************96 PP
2K-box90.53.1e-30841759100
             K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                       ++ +k ++++q++  Lk ++e+Lq+ qR+llGedL +L++k+L qLe++L+ksl++iRs K++++l q++el+kke++l e+n+aL++k+ee
  Eucgr.G02427.1.p  84 QDPKKIQHCYQKYVELKMKVESLQHAQRNLLGEDLVELNMKDLDQLEDKLDKSLRQIRSSKTKFMLGQVDELRKKEDMLLEANNALKRKIEE 175
                       566789************************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.548161IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-40160IPR002100Transcription factor, MADS-box
CDDcd002656.21E-44276No hitNo description
SuperFamilySSF554552.35E-32275IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-32323IPR002100Transcription factor, MADS-box
PfamPF003195.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-323859IPR002100Transcription factor, MADS-box
PfamPF014864.1E-2487173IPR002487Transcription factor, K-box
PROSITE profilePS5129714.6189179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRKNGLLK KAYELSVLCD AEVALIIFSS RGKLHEFCSG  60
PSMAETIEKY QRCSYDVLEM EASQDPKKIQ HCYQKYVELK MKVESLQHAQ RNLLGEDLVE  120
LNMKDLDQLE DKLDKSLRQI RSSKTKFMLG QVDELRKKED MLLEANNALK RKIEEIDAEL  180
QLSWNANAGD RNVIYNNQAA QLQYNFEPLN YNDASQLGFN PMFTEQRNNL ASSAQTGTTR  240
YIPGWML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-19179186MEF2 CHIMERA
6byy_B5e-19179186MEF2 CHIMERA
6byy_C5e-19179186MEF2 CHIMERA
6byy_D5e-19179186MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G02427.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0728673e-67AK072867.1 Oryza sativa Japonica Group cDNA clone:J023143P16, full insert sequence.
GenBankFJ7509363e-67FJ750936.1 Oryza sativa clone KCS108B10 MADS-box transcription factor 8 mRNA, complete cds.
GenBankOSU788923e-67U78892.1 Oryza sativa MADS box protein (OsMADS8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066815.10.0PREDICTED: MADS-box protein CMB1
SwissprotQ8LLR22e-94MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A059BGR20.0A0A059BGR2_EUCGR; Uncharacterized protein
STRINGXP_010066815.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71352440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.16e-77MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]