PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.G02493.1.p

Common Name

EUGRSUZ_G02493, LOC104453941

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Dof

Protein Properties

Length: 241aa MW: 26499.5 Da PI: 8.2665

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.G02493.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.8	1e-37	141	200	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +ek+l+cprC+s++tkfCyynny+l+qPr++C++C+ryWt+GG++rn+PvG+grrk+k+s Eucgr.G02493.1.p 141 PEKILPCPRCNSMDTKFCYYNNYNLNQPRHLCRKCQRYWTAGGTMRNIPVGAGRRKSKNS 200 78999****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-29	138	198	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.1E-32	143	199	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.062	145	199	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	147	183	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MLEMKDAAIK LFGQTIGLRE KRGVLDEPSW GGGKEFASEA GGPGSWDRGG SVSADAAWQE 60 QRGGREAGET RGDKALSERE PMNEKYEEGI SCWAVDNPKD SAESTIINQK DETGRETSPP 120 SAQNKEESET SISRETTLKK PEKILPCPRC NSMDTKFCYY NNYNLNQPRH LCRKCQRYWT 180 AGGTMRNIPV GAGRRKSKNS YAATVALFHN TGVPESLRAD CAGDLKTAGT TILRFGFRFS 240 *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.G02493.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010066902.1	1e-180	PREDICTED: cyclic dof factor 2
TrEMBL	A0A059BFI3	1e-178	A0A059BFI3_EUCGR; Uncharacterized protein
STRING	XP_010066902.1	1e-179	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2809	26	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	4e-41	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Eucgr.G02493.1.p
Entrez Gene	104453941