PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.G02557.2.p

Common Name

EUGRSUZ_G02557

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C3H

Protein Properties

Length: 606aa MW: 66962.7 Da PI: 5.1187

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.G02557.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.7	3.5e-07	23	45	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C ff++ G+C GdrC F Hg Eucgr.G02557.2.p 23 PVPCVFFQK-GICLKGDRCAFLHG 45 579****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	2.9E-5	20	46	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.333	20	47	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.03E-6	21	45	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.0E-5	22	46	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 606 aa Download sequence Send to blast
MPPAMPPAMP PVAQASYNSG KQPVPCVFFQ KGICLKGDRC AFLHGTNTVV SKVQQAPASS 60 PVNDSSTVKK PFGSLEKCSQ GQKVPPNASK LTSRPSELKP FPKVENAIPR NEVSIEKSAP 120 PSLPPPRIID EGASRYRPSS TPTVNGNLQN RTSRLHQPVV ADDYHSSHKD KEADEYLRES 180 SPGFDVLVDD ELGESDYYHN DDQFGRGRTH EGRNIGSVTD YDLDRPGDYS ADIEHEMFRD 240 PRAYDSFDRR YGWDQRQDSS DLILGGPILR DRRAYPKSDS PEHADDSDLR HRLSKHRRVN 300 GLRSVVVPDS HVADRTYRGS SRRDSQHSSS HEGQGSSRLK GRIKFPGRLN GGDVNSDRET 360 ETGRNPGRSY QGVNRLRDRL KGRAQDDYNV EARNFQGPRM RRESVDEKSI NFVGPKSLAE 420 LKGLGRGQES SPSMGKQQNC SLDQPLGDVS FEGPKPLSVL LKRKREPEGT GSGSRSSASK 480 EEHSHEVNSQ KHGDLTIHPK EEEDSYKSKS GTADAVGSNK DHTEGASSAV HGEIENEDGM 540 IVEDATEDPE LGADDQRDGD YYEQGDEGDY NYEEGENAEG DGEEEEYLDD EDGDDFAKKV 600 GVMFS*

Sequence ? help Back to Top

Protein Sequence Length: 606 aa Download sequence Send to blast

MPPAMPPAMP PVAQASYNSG KQPVPCVFFQ KGICLKGDRC AFLHGTNTVV SKVQQAPASS  60
PVNDSSTVKK PFGSLEKCSQ GQKVPPNASK LTSRPSELKP FPKVENAIPR NEVSIEKSAP  120
PSLPPPRIID EGASRYRPSS TPTVNGNLQN RTSRLHQPVV ADDYHSSHKD KEADEYLRES  180
SPGFDVLVDD ELGESDYYHN DDQFGRGRTH EGRNIGSVTD YDLDRPGDYS ADIEHEMFRD  240
PRAYDSFDRR YGWDQRQDSS DLILGGPILR DRRAYPKSDS PEHADDSDLR HRLSKHRRVN  300
GLRSVVVPDS HVADRTYRGS SRRDSQHSSS HEGQGSSRLK GRIKFPGRLN GGDVNSDRET  360
ETGRNPGRSY QGVNRLRDRL KGRAQDDYNV EARNFQGPRM RRESVDEKSI NFVGPKSLAE  420
LKGLGRGQES SPSMGKQQNC SLDQPLGDVS FEGPKPLSVL LKRKREPEGT GSGSRSSASK  480
EEHSHEVNSQ KHGDLTIHPK EEEDSYKSKS GTADAVGSNK DHTEGASSAV HGEIENEDGM  540
IVEDATEDPE LGADDQRDGD YYEQGDEGDY NYEEGENAEG DGEEEEYLDD EDGDDFAKKV  600
GVMFS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	392	401	RNFQGPRMRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.G02557.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010066967.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 17
TrEMBL	A0A059BFZ2	0.0	A0A059BFZ2_EUCGR; Uncharacterized protein
STRING	XP_010066967.1	0.0	(Eucalyptus grandis)

Link Out ? help Back to Top
Phytozome	Eucgr.G02557.2.p