PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G02636.1.p
Common NameEUGRSUZ_G02636
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family AP2
Protein Properties Length: 235aa    MW: 25251.1 Da    PI: 6.7915
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G02636.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-182577156
               AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                      s+y+GV +++++grW+A+I       g +k+++lg++gt eeAa+a++ a+ +++g+
  Eucgr.G02636.1.p 25 SKYRGVARHHRNGRWEARIGRvH---G-NKYIYLGTYGTQEEAAEAYDMAAIQYRGA 77
                      89****************98833...3.5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.6E-142576IPR001471AP2/ERF domain
CDDcd000184.35E-242585No hitNo description
SuperFamilySSF541717.19E-182585IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-182684IPR001471AP2/ERF domain
SMARTSM003801.5E-252690IPR001471AP2/ERF domain
PROSITE profilePS5103218.4792684IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MQSLSRDEYR ALLRRHSQGF SRGVSKYRGV ARHHRNGRWE ARIGRVHGNK YIYLGTYGTQ  60
EEAAEAYDMA AIQYRGANAV TNFDVGVYVD RLKKKGIRID RFGSDQPPQP LRNPRPPRIE  120
ASATGDGELP WSCSDDMGFA QLPIPNLPDL FDEIDGFEDD IDLIFHPESG KEIVHGSALM  180
ERSESSSGAD KVDGSAAGGG GSGGPKKLLS SSGLLSSTTT AASTASAVSC LSCV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G02636.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018715238.11e-170PREDICTED: ethylene-responsive transcription factor WRI1 isoform X2
TrEMBLA0A059BFX81e-172A0A059BFX8_EUCGR; Uncharacterized protein
STRINGXP_010068814.11e-135(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.22e-44ERF family protein