PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.G02745.1.p

Common Name

EUGRSUZ_G02745

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 271aa MW: 29902.6 Da PI: 8.0402

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.G02745.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00028	90	112	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H Eucgr.G02745.1.p 90 YECKTCNKTFPSFQALGGHRASH 112 99**********99999998887 PP
2	zf-C2H2	15.3	5.8e-05	173	195	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F++ L H+r+H Eucgr.G02745.1.p 173 HECSICGTEFTSGQALGGHMRRH 195 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.85E-9	89	112	No hit	No description
Pfam	PF13912	2.0E-13	89	114	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.029	90	112	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.242	90	117	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	92	112	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.85E-9	168	195	No hit	No description
SMART	SM00355	0.012	173	195	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.743	173	195	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.9E-11	173	197	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	175	195	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MEPSQEEAAL GGPKEHTQII VKGKRTKRQR PQSPILFVST GSPMSSEGGD CVDNTQGQSK 60 EPSRRVVIQE DHDNSNKFTS KRYLEGYCVY ECKTCNKTFP SFQALGGHRA SHKKLKLATA 120 AAEEKPPLYK QFMFLPSSPE QEEGEFKKVS TFSLGNINIY GSNGNCKKQA KIHECSICGT 180 EFTSGQALGG HMRRHRPPVA VGVKLESDDE STRLSANGLL SLDLDLNLPA PEEENRDHLF 240 LLSSKQQHHH QKQSHAPIFV SGPAVVDCHY *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.G02745.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010067204.2	1e-151	PREDICTED: zinc finger protein ZAT5
TrEMBL	A0A059BGP7	0.0	A0A059BGP7_EUCGR; Uncharacterized protein
STRING	XP_010067204.1	1e-138	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2231	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	2e-31	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Eucgr.G02745.1.p