PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G02789.1.p
Common NameEUGRSUZ_G02789, LOC104454176
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 365aa    MW: 41477.5 Da    PI: 5.0022
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G02789.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.5e-0690113226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       k  lC f+ + G+C  G +CkF+H+
  Eucgr.G02789.1.p  90 KSILCEFYKA-GQCTKGFKCKFSHD 113
                       6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.0E-588114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.388115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-688113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-490114IPR000571Zinc finger, CCCH-type
SMARTSM003560.9158195IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.216158196IPR000571Zinc finger, CCCH-type
PfamPF165432.5E-17218297IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MPPKQQSKAD VAKKQKVVED KTFGLKNKNK SKNVQKYVQS LQQSVQPKPD ASKVAAKKKK  60
EEEKAREKEL NDLFKIAVSQ PKVPVGVDPK SILCEFYKAG QCTKGFKCKF SHDLNVQRKG  120
EKIDIYSDKR DEDTMEDWDQ ETLEKVVESK KKEYNQNKPT EIVCKYFLES VEKKQYGWFW  180
SCPNGGKDCH YRHALPPGYV LKSQMKALIE EEADKAPIED QIEDQRSKLT ASTPMTPELF  240
VQWKKKKIEE REVGLAAQRA ERAKNDRMSG RELFLSDASL FVDDAEAYDK YQREEELEDA  300
KDNAGGKSAE GQPSTSRSAV AESEEVLLDD DDDDELDMDE LNELEASLSK TSIQIREPGI  360
EASS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G02789.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067249.10.0PREDICTED: zinc finger CCCH domain-containing protein 21
SwissprotQ0JHZ20.0C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A059BGV80.0A0A059BGV8_EUCGR; Uncharacterized protein
STRINGXP_010067249.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48742333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-173C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]