PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G02793.1.p
Common NameEUGRSUZ_G02793, LOC104454178
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family AP2
Protein Properties Length: 489aa    MW: 53029.9 Da    PI: 8.1279
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G02793.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.8e-17172221155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  Eucgr.G02793.1.p 172 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAYAAARAYDRAAIKFRG 221
                       78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.77E-15172231IPR016177DNA-binding domain
PfamPF008478.4E-9172221IPR001471AP2/ERF domain
CDDcd000186.44E-12173231No hitNo description
Gene3DG3DSA:3.30.730.109.8E-17173229IPR001471AP2/ERF domain
SMARTSM003804.3E-32173235IPR001471AP2/ERF domain
PROSITE profilePS5103217.517173229IPR001471AP2/ERF domain
SMARTSM003800.002267315IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MLDLNLEMIS SDSSCDNDKN QIDVQEREEE PATKLREASG NYDMEEDSGT SNSTIVASAE  60
EASGNAGEEN SSNTTSSSSI FYIMKEKEKG SKGGFKAGDP PPSPPGLITR QLFPVAGAGE  120
HGHQVAELGL GLPARQQWLN LSFGEPTGAP TEFRILQPKQ RKSRRGPRSR SSQYRGVTFY  180
RRTGRWESHI WDCGKQVYLG GFDTAYAAAR AYDRAAIKFR GVDADINFNI SDYEEDMKQL  240
QMVNLSKEEF VQILRRQSTG ISRGSSKHRG MTLQKCGRWD ARAGPLLGNK ASDNAANKCN  300
GMEAVMNFQP GSYEGDTKPY PRAGGGGHNL DLSLGMSLPS SSSMGAGTQR DMLFHCADHE  360
MPNIVMVGCS SSAHKGGELP NIGMASRSPP IWSTLYPALA PNYEGKAMEK RAEAIPALRF  420
SSYRLPVHGN VNNANNGSQQ AQLFTYAASS GFSSSTATPH PPPQLPVSLQ KNGVHNNTAS  480
RAYFSYRS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G02793.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067252.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1
TrEMBLA0A059BGK70.0A0A059BGK7_EUCGR; Uncharacterized protein
STRINGXP_010067252.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM164641011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.22e-67related to AP2.7