PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G02793.2.p
Common NameEUGRSUZ_G02793, LOC104454178
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family AP2
Protein Properties Length: 487aa    MW: 52788.6 Da    PI: 8.1279
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G02793.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.8e-17172221155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  Eucgr.G02793.2.p 172 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAYAAARAYDRAAIKFRG 221
                       78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.4E-9172221IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-15172231IPR016177DNA-binding domain
CDDcd000186.63E-12173231No hitNo description
SMARTSM003804.3E-32173235IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.8E-17173229IPR001471AP2/ERF domain
PROSITE profilePS5103217.517173229IPR001471AP2/ERF domain
SMARTSM003800.002265313IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MLDLNLEMIS SDSSCDNDKN QIDVQEREEE PATKLREASG NYDMEEDSGT SNSTIVASAE  60
EASGNAGEEN SSNTTSSSSI FYIMKEKEKG SKGGFKAGDP PPSPPGLITR QLFPVAGAGE  120
HGHQVAELGL GLPARQQWLN LSFGEPTGAP TEFRILQPKQ RKSRRGPRSR SSQYRGVTFY  180
RRTGRWESHI WDCGKQVYLG GFDTAYAAAR AYDRAAIKFR GVDADINFNI SDYEEDMKQM  240
VNLSKEEFVQ ILRRQSTGIS RGSSKHRGMT LQKCGRWDAR AGPLLGNKAS DNAANKCNGM  300
EAVMNFQPGS YEGDTKPYPR AGGGGHNLDL SLGMSLPSSS SMGAGTQRDM LFHCADHEMP  360
NIVMVGCSSS AHKGGELPNI GMASRSPPIW STLYPALAPN YEGKAMEKRA EAIPALRFSS  420
YRLPVHGNVN NANNGSQQAQ LFTYAASSGF SSSTATPHPP PQLPVSLQKN GVHNNTASRA  480
YFSYRS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G02793.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067253.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X2
TrEMBLA0A059BGW40.0A0A059BGW4_EUCGR; Uncharacterized protein
STRINGXP_010067252.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.23e-68related to AP2.7