PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G02796.1.p
Common NameEUGRSUZ_G02796
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NF-YB
Protein Properties Length: 200aa    MW: 22155 Da    PI: 8.3823
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G02796.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB180.71.3e-5627122196
             NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                       vreqdr+lPian+srimkk+lPan+ki+kdak+tvqecvsefisf+tseasdkcq+ekrktingddllwa+atlGfe+y+eplkvyl++yre+
  Eucgr.G02796.1.p  27 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEEYIEPLKVYLARYREV 119
                       69******************************************************************************************9 PP

             NF-YB  94 ege 96 
                        ++
  Eucgr.G02796.1.p 120 RRH 122
                       986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.6E-5323124IPR009072Histone-fold
SuperFamilySSF471135.12E-3930124IPR009072Histone-fold
PfamPF008082.4E-283397IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.6E-216179No hitNo description
PROSITE patternPS0068506480IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.6E-218098No hitNo description
PRINTSPR006152.6E-2199117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MAEAPASPMG GGSHESGGEQ SPQSGGVREQ DRYLPIANIS RIMKKALPAN GKIAKDAKDT  60
VQECVSEFIS FITSEASDKC QKEKRKTING DDLLWAMATL GFEEYIEPLK VYLARYREVR  120
RHQRFCKGWR WFSSKGCFRR SAWSECPVCS AGFIESACGL YESTVWSTGL SKLRQCASMN  180
HISSFSDIDA AYASYYGGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A1e-4628118393NF-YB
4awl_B9e-4728118494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A9e-4728118494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G02796.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067258.11e-82PREDICTED: nuclear transcription factor Y subunit B-1
SwissprotQ8VYK43e-67NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A059BGX01e-146A0A059BGX0_EUCGR; Uncharacterized protein
STRINGXP_010067258.15e-82(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14802794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.34e-63nuclear factor Y, subunit B1
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]