PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G02910.1.p
Common NameEUGRSUZ_G02910, LOC104454274
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 197aa    MW: 20943 Da    PI: 8.8715
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G02910.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00123860123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C++ Fs+   L  H  +H
  Eucgr.G02910.1.p 38 FECKTCNRQFSSFQALGGHRASH 60
                      89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.58E-936110No hitNo description
PfamPF139121.4E-123762IPR007087Zinc finger, C2H2
SMARTSM003550.23860IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.2423865IPR007087Zinc finger, C2H2
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
PfamPF139127.2E-1087112IPR007087Zinc finger, C2H2
PROSITE profilePS501579.20388115IPR007087Zinc finger, C2H2
SMARTSM003550.588110IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MAMKREFESM AMANCLMLLS RGVEFESVVD HSMPSRVFEC KTCNRQFSSF QALGGHRASH  60
KKPRLSSAGG DDSSQSQGSA SPAKPKTHEC SICGLEFAIG QALGGHMRRH RAAMSEGART  120
ATATATAAAM APPPRPLAQI SAVSPASQAP VVKKTNSGRV LWLDLNLTPM ENESDLEFRL  180
GTKTPAPPPV IDCYVV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G02910.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067376.11e-144PREDICTED: zinc finger protein ZAT12
TrEMBLA0A059BIK61e-143A0A059BIK6_EUCGR; Uncharacterized protein
STRINGXP_010067376.11e-143(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.15e-35C2H2 family protein