PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.G02955.1.p

Common Name

EUGRSUZ_G02955, LOC104454318

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LBD

Protein Properties

Length: 223aa MW: 24376.4 Da PI: 4.8166

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.G02955.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.3	1.5e-39	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkC++dCv+apyf+ +q + +fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdP+yG+v++i++lq+q+++l++ Eucgr.G02955.1.p 7 SCGACKFLRRKCTSDCVFAPYFCYDQaSTHFAAVHKVFGASNVSKLLLHLPVHTRSDAAITISYEALARMRDPIYGCVAHIFALQEQVANLQE 99 6**********************9779************************************************************ PP DUF260 93 elallkee 100 e++ l+++ Eucgr.G02955.1.p 100 EIEILGTQ 107 998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.356	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.8E-37	7	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MTGLGSSCGA CKFLRRKCTS DCVFAPYFCY DQASTHFAAV HKVFGASNVS KLLLHLPVHT 60 RSDAAITISY EALARMRDPI YGCVAHIFAL QEQVANLQEE IEILGTQMAN LGVGVPSWRN 120 SPVPGNPSNF GPQFSGSDAM NVQFYLNHQQ DPLLPQAEAA TTTNLQALES SMNEEFPPIY 180 GWEDQNPFCD NYPNLLERLF EGVDREAFSS CSWLNGGNGL GK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-35	3	114	7	117	LOB family transfactor Ramosa2.1
5ly0_B	1e-35	3	114	7	117	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.G02955.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17259263}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010067432.1	1e-167	PREDICTED: LOB domain-containing protein 29
Swissprot	Q9LHS8	4e-60	LBD33_ARATH; LOB domain-containing protein 33
TrEMBL	A0A059BH53	1e-166	A0A059BH53_EUCGR; Uncharacterized protein
STRING	XP_010067432.1	1e-167	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	2e-62	LOB domain-containing protein 33

Link Out ? help Back to Top
Phytozome	Eucgr.G02955.1.p
Entrez Gene	104454318

Publications ? help Back to Top
Bargmann BO,Birnbaum KD,Brenner ED An undergraduate study of two transcription factors that promote lateral root formation. Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45 [PMID:24615800]