PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.G03078.1.p

Common Name

EUGRSUZ_G03078, LOC104454412

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LBD

Protein Properties

Length: 183aa MW: 20304.5 Da PI: 8.6711

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.G03078.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.1	4.1e-40	20	119	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+l+rkC++ C++apyf +++pkkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i lq+++ +l+++ Eucgr.G03078.1.p 20 SCAACKLLKRKCTSTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMLELQHD 112 6******************************************************************************************** PP DUF260 94 lallkee 100 la ++++ Eucgr.G03078.1.p 113 LAIARAR 119 *999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.303	19	120	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-39	20	117	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MRAMRMKQAM KGHEPRSSSS CAACKLLKRK CTSTCIFAPY FRSDEPKKFA KVHKVFGASN 60 VSKILVEVPE EQREDTVNSL AYEAEARLRD PVYGCIGAIA LLQRKMLELQ HDLAIARARL 120 ARYTVPAVST SSPSVLMDEN VGMVSFYDMP CCSGVNESFG QSSSQLTQVQ PMNDFGQFPY 180 IF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-46	15	123	6	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-46	15	123	6	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.G03078.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010067553.1	1e-135	PREDICTED: LOB domain-containing protein 21
Swissprot	Q9SRL8	2e-66	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A059BI25	1e-133	A0A059BI25_EUCGR; Uncharacterized protein
STRING	XP_010067552.1	1e-134	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10255	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	8e-67	LOB domain-containing protein 21

Link Out ? help Back to Top
Phytozome	Eucgr.G03078.1.p
Entrez Gene	104454412

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]