PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.G03135.1.p

Common Name

EUGRSUZ_G03135, LOC104454461

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bZIP

Protein Properties

Length: 357aa MW: 39194.6 Da PI: 6.4551

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.G03135.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.7	3.2e-10	157	214	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + + l++e Eucgr.G03135.1.p 157 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTSGLTAE 214 9*****************************************9998877776666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.9E-16	153	217	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.749	155	218	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.2E-10	157	208	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.5E-10	157	211	No hit	No description
Pfam	PF00170	7.2E-9	157	208	IPR004827	Basic-leucine zipper domain
CDD	cd14703	5.73E-24	158	207	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MEMRDPPPNP SHSPHIPSPQ NPRAAPAIAP PLAAPRGGHH RRAHSEVNFR IPEDLDLGPD 60 PFENGPSGSF EDFGSEDDLL STYMDIEKFG SKLDDGQGPS DPKPENAGGG GDVGEKSARP 120 RHRYSNSVDS SSILESIEAK KAMAPDKLAE LWTIDPKRAK RILANRQSAA RSKERKARYI 180 SELERKVQTL QTEATTLSAQ LTLFQRDTSG LTAENTELKL RLQAMEQQAQ LRDALNEALK 240 KEVERLKVAT GEAMTPSDTY NLGLHHFPYA KPSYFPHQPQ SGHVDPQNLQ MTQFHMFQPN 300 MAHQPLVAAA HSNAFSDMMQ QESLGRFQGL DISNKGSQIV KSEAPSISAS ESSSTF*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MEMRDPPPNP SHSPHIPSPQ NPRAAPAIAP PLAAPRGGHH RRAHSEVNFR IPEDLDLGPD  60
PFENGPSGSF EDFGSEDDLL STYMDIEKFG SKLDDGQGPS DPKPENAGGG GDVGEKSARP  120
RHRYSNSVDS SSILESIEAK KAMAPDKLAE LWTIDPKRAK RILANRQSAA RSKERKARYI  180
SELERKVQTL QTEATTLSAQ LTLFQRDTSG LTAENTELKL RLQAMEQQAQ LRDALNEALK  240
KEVERLKVAT GEAMTPSDTY NLGLHHFPYA KPSYFPHQPQ SGHVDPQNLQ MTQFHMFQPN  300
MAHQPLVAAA HSNAFSDMMQ QESLGRFQGL DISNKGSQIV KSEAPSISAS ESSSTF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.G03135.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010067612.1	0.0	PREDICTED: transcription factor RF2b isoform X1
Swissprot	O22873	1e-121	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A059BJA8	0.0	A0A059BJA8_EUCGR; Uncharacterized protein
STRING	XP_010067612.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4042	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-120	bZIP family protein

Link Out ? help Back to Top
Phytozome	Eucgr.G03135.1.p
Entrez Gene	104454461

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]