PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.G03198.1.p

Common Name

EUGRSUZ_G03198

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NF-YC

Protein Properties

Length: 215aa MW: 24226.1 Da PI: 9.7587

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.G03198.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	59.9	5.6e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl +iv r Eucgr.G03198.1.p 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLREIVSR 86 5789*************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.2E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	1.51E-20	4	96	IPR009072	Histone-fold
Pfam	PF00808	1.3E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TMNSLHLKHC VQSYNVFDFL REIVSRVPDY GHGHGHSDAV SEDRTVSRRR KATIDDGNDT 120 DEESKKSRMP ILAAVAEEEA VAEEEAAGVV AEPLRGRLRT MKLNHLSRPH LCNLSTRTLS 180 IKEQFQITAL SQRKLLRKLS QPLMVPSLER MVLI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-23	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.G03198.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018733368.1	1e-90	PREDICTED: dr1-associated corepressor
Swissprot	Q9D6N5	2e-31	NC2A_MOUSE; Dr1-associated corepressor
TrEMBL	A0A059BJ02	1e-155	A0A059BJ02_EUCGR; Uncharacterized protein
STRING	XP_010067677.1	5e-90	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3506	24	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	5e-73	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Eucgr.G03198.1.p