PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G03258.4.p
Common NameEUGRSUZ_G03258
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 405aa    MW: 45973.8 Da    PI: 6.3795
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G03258.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS428.84.3e-131340118374
              GRAS  18 elaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegee 110
                        +a+ +L+++s++aspdgd+mqR+aayfteALa r+++ +++l kal++++ s+  +see+ + + f+e++P+lk++++++NqaIlea++ge+
  Eucgr.G03258.4.p   3 DNANICLEQISHHASPDGDTMQRIAAYFTEALADRILKGWPGLHKALNSTKISP--VSEEILVKRWFFELCPFLKLAYVITNQAILEAMDGEK 93 
                       68999******************************************9999985..************************************* PP

              GRAS 111 rvHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEala 203
                       +vHiiD++  +++QW++Llq+L +Rpegpp+lRiTg+++    +ke l +++ rL++ Ae+l++pf+fn+ v+ +le+l+le+Lrvk+gEala
  Eucgr.G03258.4.p  94 MVHIIDLNSFEPAQWVNLLQSLRARPEGPPHLRITGIHE----QKEVLDQMALRLNEEAEKLDIPFQFNP-VVCKLENLDLESLRVKTGEALA 181
                       ***************************************....9**************************.6888****************** PP

              GRAS 204 Vnlvlqlhrll..................................................desvsleserdevLklvkslsPkvvvvveqea 246
                       +++vlqlh++l                                                  d+ + ++ +   +L  +++lsPk++v++eqe+
  Eucgr.G03258.4.p 182 ISSVLQLHTILaaddemqrrtspsasnssnsshqqralhmkqrtlgewlekdvvnlycaspDSALVSSPKMGGFLTSLWGLSPKLMVITEQES 274
                       ***********************************************************97554444447999******************** PP

              GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                       +hn ++++er +eal++y +lfd+le+++pr+s er+kvE++l+g+ei+n++aceg +r+erhe+lekW  rle aGF++v+ls++   qa +
  Eucgr.G03258.4.p 275 NHN-GTLMERYVEALYFYGSLFDCLESTVPRASVERQKVEKMLFGEEIKNIIACEGIQRKERHEKLEKWILRLELAGFGKVSLSYNGLLQAGR 366
                       **6.68*************************************************************************************** PP

              GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       ll++++ dgy+++ee+g+l+l+W+drpL+svSaWr
  Eucgr.G03258.4.p 367 LLQNYGYDGYTLKEENGCLLLCWHDRPLFSVSAWR 401
                       **********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.4471381IPR005202Transcription factor GRAS
PfamPF035141.5E-1283401IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MTDNANICLE QISHHASPDG DTMQRIAAYF TEALADRILK GWPGLHKALN STKISPVSEE  60
ILVKRWFFEL CPFLKLAYVI TNQAILEAMD GEKMVHIIDL NSFEPAQWVN LLQSLRARPE  120
GPPHLRITGI HEQKEVLDQM ALRLNEEAEK LDIPFQFNPV VCKLENLDLE SLRVKTGEAL  180
AISSVLQLHT ILAADDEMQR RTSPSASNSS NSSHQQRALH MKQRTLGEWL EKDVVNLYCA  240
SPDSALVSSP KMGGFLTSLW GLSPKLMVIT EQESNHNGTL MERYVEALYF YGSLFDCLES  300
TVPRASVERQ KVEKMLFGEE IKNIIACEGI QRKERHEKLE KWILRLELAG FGKVSLSYNG  360
LLQAGRLLQN YGYDGYTLKE ENGCLLLCWH DRPLFSVSAW RFRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-65340336381Protein SCARECROW
5b3h_A4e-65340335380Protein SCARECROW
5b3h_D4e-65340335380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G03258.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018733387.10.0PREDICTED: scarecrow-like protein 3 isoform X2
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A059BIP50.0A0A059BIP5_EUCGR; Uncharacterized protein
STRINGXP_010067760.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]