PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G03377.1.p
Common NameEUGRSUZ_G03377
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NF-YA
Protein Properties Length: 151aa    MW: 16669.8 Da    PI: 10.6462
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G03377.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.22e-31965158
         CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                      +ep+YVNaKQy++Il+RR  Rak+e ++k   k+rkpylheSRh+hA+rRpRgsgGrF
  Eucgr.G03377.1.p  9 EEPVYVNAKQYHGILRRRRIRAKAELDRKA-VKGRKPYLHESRHRHAMRRPRGSGGRF 65
                      69**************************99.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.0E-34768IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.858868IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.0E-271065IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-241133IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068601333IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.3E-244265IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MPLPLEMAEE PVYVNAKQYH GILRRRRIRA KAELDRKAVK GRKPYLHESR HRHAMRRPRG  60
SGGRFLNTKR LDSDDSSFAA EKAVNSSVDL PTQFVKTSTA QGFQTRSMRA DSTGSNGNAS  120
ANGLSYQGIS CLGAEKETLQ LYEGPNGAYK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-21973266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14958RHRHAMRRPR
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G03377.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067868.11e-107PREDICTED: nuclear transcription factor Y subunit A-9
SwissprotQ945M92e-32NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLA0A059BJ901e-107A0A059BJ90_EUCGR; Uncharacterized protein
STRINGXP_010067868.11e-106(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM160191014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.17e-35nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]