PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G03396.1.p
Common NameEUGRSUZ_G03396, LOC104454673
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 393aa    MW: 43793.3 Da    PI: 7.8274
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G03396.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.6e-11329374655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR ri +++ +L++l P+     +k  s a++L +Av YIk+Lq
  Eucgr.G03396.1.p 329 SIAERVRRGRISERMRKLQDLFPNF----DKQTSTADMLDMAVVYIKDLQ 374
                       689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.322323373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14326384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-9327378No hitNo description
Gene3DG3DSA:4.10.280.101.0E-12328384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-11329379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-7329374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MSLLFSPRVE CLEGELKKDP GFMESVMHNP PHLQQLNSSL MRYRSSPSSF FDCLVNGNGS  60
DIGCEDYSYP HSLSPEMDAA IVKLMSIDGF ESNDMQEDGR RSVKQESEVV FRTSVSPAMD  120
GTSPVHRHLD HEILANSIGF GSFFDEANSM VLQSNAPAEL GSGKRSNLVR QSSSPAGFTS  180
NIVVEIGFDA RRDAQNLEMR KGDGSFCSKS KSVGQTDLRS TSISTSRHMP QIAEMENENK  240
LDRMRKSWKN TTFNGLKRVR EEDANLSSSI HTMENQDNVT RNRTHGLTHH LSLPKTSTEM  300
AAVGNILHFQ DTVSCKARAK RGCATHPRSI AERVRRGRIS ERMRKLQDLF PNFDKQTSTA  360
DMLDMAVVYI KDLQEQVKLL SESKAKCICS SK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G03396.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067890.10.0PREDICTED: transcription factor bHLH130 isoform X2
TrEMBLA0A059BIS50.0A0A059BIS5_EUCGR; Uncharacterized protein
STRINGXP_010067890.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1673789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-54bHLH family protein