PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H00042.1.p
Common NameEUGRSUZ_H00042, LOC104456018
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 173aa    MW: 19684.6 Da    PI: 7.6267
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H00042.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.31.5e-161051243
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                       i n+s r++tf kR+ g+lKKA+EL +LC+++ + ii+  +
  Eucgr.H00042.1.p 10 LITNDSVRKTTFRKRKGGLLKKASELKTLCGVDTCAIIYTAN 51
                      599******************************997776543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.787151IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-20160IPR002100Transcription factor, MADS-box
CDDcd002661.46E-27285No hitNo description
SuperFamilySSF554556.02E-25291IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-8323IPR002100Transcription factor, MADS-box
PfamPF003194.1E-171157IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MGRRKVRLEL ITNDSVRKTT FRKRKGGLLK KASELKTLCG VDTCAIIYTA NDAEPHVWPS  60
PEDAQRVLER FQSLPSKKQG KHMLNHEDYR PKDVSMLELK LENGIKRNQD LEMELLLLDH  120
LSGKNVVDLI KDDEMKMLYQ SVDDKIRDLT LQMANLKASE VEEDAHSTAP AN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVRLELITNDSVRKTTFRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H00042.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010069013.11e-125PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A059ATZ41e-123A0A059ATZ4_EUCGR; Uncharacterized protein
STRINGXP_010069013.11e-124(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.26e-28M-type_MADS family protein