PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H00105.1.p
Common NameEUGRSUZ_H00105
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GATA
Protein Properties Length: 252aa    MW: 26998.3 Da    PI: 9.8566
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H00105.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.63.5e-18171205135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C +Cg+ kTp+WR gp+g ktLCnaCG+++++ +l
  Eucgr.H00105.1.p 171 CLHCGSEKTPQWRAGPQGAKTLCNACGVRFKSGRL 205
                       99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.295165201IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-16165215IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.23E-14167228No hitNo description
Gene3DG3DSA:3.30.50.101.2E-14169203IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.86E-13170218No hitNo description
PfamPF003205.2E-16171205IPR000679Zinc finger, GATA-type
PROSITE patternPS003440171196IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
VVDEEDDLGK SSCSKAKAAA AAAAAATSLP DSASFDASST PSLPEWEEEL EWISNKDSFP  60
SLESFVILPE QPGNNFKEDN LIPPLENSSS SSTTTSTHSS GNRSGTVTIA SCCGGPPLPF  120
RRARSKRARE RRHGDLSVFA AERLLISRDQ EKANKKTKLG GQGSVKIGRK CLHCGSEKTP  180
QWRAGPQGAK TLCNACGVRF KSGRLVPEYR PANSPTFSSE LHSNSHRKII EMRRTKQMGG  240
GGVKGVDIRV K*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H00105.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010025821.10.0PREDICTED: GATA transcription factor 1, partial
SwissprotQ8LAU96e-47GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A059ATX30.0A0A059ATX3_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010025821.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129872430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.17e-43GATA transcription factor 1