PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H00184.1.p
Common NameEUGRSUZ_H00184, LOC104416108
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 169aa    MW: 18862.8 Da    PI: 6.0269
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H00184.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000133153123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C+ C++ F++   L  H++ H
  Eucgr.H00184.1.p 31 YECTFCKRGFTNAQALGGHMNIH 53
                      99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.8E-52857IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.91E-72957No hitNo description
PROSITE profilePS5015711.4683158IPR007087Zinc finger, C2H2
SMARTSM003550.00973153IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MEPGRLCSES SSEESDPFEQ LKEEGSVKRS YECTFCKRGF TNAQALGGHM NIHRKDRAKG  60
KQAPSAAPNM RKIYDPYVIA SNHFGSKSGQ GKDDEAQRSY SHQGLQTSAM NPRNYLESLH  120
SLQRGDDVIW DASLSLQIGP SNMERTGEVK QDENREEVDL ELRLGRDP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H00184.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010025845.11e-124PREDICTED: probable transcriptional regulator RABBIT EARS
TrEMBLA0A059AVE61e-123A0A059AVE6_EUCGR; Uncharacterized protein
STRINGXP_010025845.11e-123(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91682435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.13e-16C2H2 family protein