PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H00572.1.p
Common NameEUGRSUZ_H00572, LOC104456381
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ZF-HD
Protein Properties Length: 191aa    MW: 20695.9 Da    PI: 8.2169
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H00572.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer90.71.3e-28758357
       ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                      +  Y+eCl+NhAaslG++a+DGCgEf+ +   ++++ +l+CaACgCHRnFHR+ +
  Eucgr.H00572.1.p  7 NEAYRECLRNHAASLGSYATDGCGEFTLD---DTSPGSLQCAACGCHRNFHRKMT 58
                      678*************************8...6789****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.2E-24957IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-171056IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.0081057IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.5E-241056IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.0E-29101173IPR009057Homeodomain-like
SuperFamilySSF466893.8E-17101171IPR009057Homeodomain-like
TIGRFAMsTIGR015651.5E-27113171IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MEGDNRNEAY RECLRNHAAS LGSYATDGCG EFTLDDTSPG SLQCAACGCH RNFHRKMTYV  60
SAHAGSGGLM VCRSGGRDNA ELCGGELVEY GRGRQLNMAA DSPESGGGGS GVKKRFRTKF  120
TTDQKEKMLA FAEKLGWKMQ RKDEEDEIER FCRSVGVSRQ VFKVWMHNHK NSSSSSTSAS  180
TGNASSLTTQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-231141761879ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H00572.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010069461.11e-140PREDICTED: zinc-finger homeodomain protein 9
TrEMBLA0A059AWK71e-139A0A059AWK7_EUCGR; Uncharacterized protein
STRINGXP_010069461.11e-139(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1852768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.19e-41homeobox protein 22