PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.H00706.1.p

Common Name

EUGRSUZ_H00706

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 83aa MW: 9143.59 Da PI: 11.2483

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.H00706.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.7	2.2e-19	4	74	20	90
FAR1 20 kkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++s +g++ +++ C+k+g++ ++k ++ +++r++ r gCka++ vk+ek+gkw+vt+++++HnH+l+ Eucgr.H00706.1.p 4 RRSGIDGRTLAHRLGCNKQGFSPNQKGSHGPDKKPRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLV 74 6777899999****************9**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-17	3	74	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 83 aa Download sequence Send to blast
MQCRRSGIDG RTLAHRLGCN KQGFSPNQKG SHGPDKKPRP SAREGCKATI LVKMEKSGKW 60 VVTRFVKDHN HPLVVTANGF GTM

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.H00706.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010069579.1	4e-55	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_010069580.1	4e-55	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X2
Refseq	XP_018717687.1	4e-55	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X2
Swissprot	Q9SZL8	1e-13	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A059AW62	2e-55	A0A059AW62_EUCGR; Uncharacterized protein (Fragment)
STRING	XP_010069579.1	2e-54	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.2	4e-32	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Eucgr.H00706.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]