PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.H00708.1.p

Common Name

EUGRSUZ_H00708

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 111aa MW: 12628.1 Da PI: 8.9247

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.H00708.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	29.5	2.4e-09	41	94	1	54
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrt 54 kfY +YA++vGF vr+ + ++s +g++ r++ +k+g++ ++k ++ +++ Eucgr.H00708.1.p 41 KFYIDYARRVGFVVRIMQRRRSGIDGRTLARRLGYNKQGFSPNQKGSHGPDKKP 94 6***************************************99999885444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.0E-7	41	88	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MDLEEEASEN PVKGENGDQE ENAISEPYVG MEFDSEEAAR KFYIDYARRV GFVVRIMQRR 60 RSGIDGRTLA RRLGYNKQGF SPNQKGSHGP DKKPRPRIVH NNLRIAHIID *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.H00708.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010069579.1	3e-64	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBL	A0A059AVV3	8e-75	A0A059AVV3_EUCGR; Uncharacterized protein
STRING	XP_010026003.1	5e-75	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	2e-30	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Eucgr.H00708.1.p