PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H00748.1.p
Common NameEUGRSUZ_H00748, LOC104456504
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 541aa    MW: 58600.3 Da    PI: 6.4337
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H00748.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.91e-09353400455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Eucgr.H00748.1.p 353 SHSLAERVRREKISERMKILQDLVPGC----NKAIGKAVMLDEIINYVQSLQ 400
                       8*************************9....888*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.56E-10347404No hitNo description
SuperFamilySSF474594.97E-17347416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-17349412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.688349399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.4E-7353400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-11355405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MENDFFMCGG ALVPPPPPPL QCAEMNCFYN PSWEKSTVDH GVAKFDSALS AIGSSPAGST  60
SNSNLSNGSF VMRDLVGKLV GVGNSSELPP HSHHLFSAMP AKTDSHVGGD NSTGNSCYST  120
PVNSPPMTDR LFQDNHHLPK LGHAVMPMNS GLAEFSPDPG FADRAARYSC FGSRSFNGRS  180
GQFSRKYGEI VNRSMPPMAD EKLTRVSSGP SLKALESQMA AEQSKNSPPQ DRGELSNSQE  240
GSSLSEQIPS VEIGLRASND AGLRKRKAVP KGKAKGSAGT LPSSNDAKVD EANENSDAKR  300
CKPDESVGNE NCSGKAEHDP KESTGTASED KQTKTEEKDY IHVRARRGQA TDSHSLAERV  360
RREKISERMK ILQDLVPGCN KAIGKAVMLD EIINYVQSLQ HQVEFLSMKL ASVNSGPDYK  420
MDALMSKEMF RSNDPIQYPI LPPDSSAASV LYGHHRHQKN SAVHNHITEG TTAQFSMDPL  480
NEPHFPPLDG LNDHVLASFC GDDLQMLVQM GFGQDKLTDA PLDHQDYHGQ NPVSHMKIEL  540
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Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H00748.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010069612.10.0PREDICTED: transcription factor bHLH62
TrEMBLA0A059AVZ00.0A0A059AVZ0_EUCGR; Uncharacterized protein
STRINGXP_010069612.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.16e-94bHLH family protein