PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H00748.2.p
Common NameEUGRSUZ_H00748
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 524aa    MW: 56806.1 Da    PI: 6.5089
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H00748.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.99.9e-10336383455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Eucgr.H00748.2.p 336 SHSLAERVRREKISERMKILQDLVPGC----NKAIGKAVMLDEIINYVQSLQ 383
                       8*************************9....888*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-17330399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.42E-10330387No hitNo description
Gene3DG3DSA:4.10.280.109.2E-17332395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.688332382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-7336383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-11338388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MDAQCAEMNC FYNPSWEKST VDHGVAKFDS ALSAIGSSPA GSTSNSNLSN GSFVMRDLVG  60
KLVGVGNSSE LPPHSHHLFS AMPAKTDSHV GGDNSTGNSC YSTPVNSPPM TDRLFQDNHH  120
LPKLGHAVMP MNSGLAEFSP DPGFADRAAR YSCFGSRSFN GRSGQFSRKY GEIVNRSMPP  180
MADEKLTRVS SGPSLKALES QMAAEQSKNS PPQDRGELSN SQEGSSLSEQ IPSVEIGLRA  240
SNDAGLRKRK AVPKGKAKGS AGTLPSSNDA KVDEANENSD AKRCKPDESV GNENCSGKAE  300
HDPKESTGTA SEDKQTKTEE KDYIHVRARR GQATDSHSLA ERVRREKISE RMKILQDLVP  360
GCNKAIGKAV MLDEIINYVQ SLQHQVEFLS MKLASVNSGP DYKMDALMSK EMFRSNDPIQ  420
YPILPPDSSA ASVLYGHHRH QKNSAVHNHI TEGTTAQFSM DPLNEPHFPP LDGLNDHVLA  480
SFCGDDLQML VQMGFGQDKL TDAPLDHQDY HGQNPVSHMK IEL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H00748.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010069612.10.0PREDICTED: transcription factor bHLH62
TrEMBLA0A059AWA10.0A0A059AWA1_EUCGR; Uncharacterized protein
STRINGXP_010069612.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-93bHLH family protein