PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H00996.1.p
Common NameEUGRSUZ_H00996, LOC104456669
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 325aa    MW: 35642.5 Da    PI: 6.8475
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H00996.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY109.31.9e-34162219259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYGqK vk+s+fprsYYrCtsa+C+vkk+vers +dp++v +tYeg+Hnh 
  Eucgr.H00996.1.p 162 EDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERSVTDPSIVMTTYEGQHNHM 219
                       8********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381304.9E-1012324IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.806.7E-35146221IPR003657WRKY domain
SuperFamilySSF1182907.32E-29153220IPR003657WRKY domain
PROSITE profilePS5081132.03156221IPR003657WRKY domain
SMARTSM007742.0E-39161220IPR003657WRKY domain
PfamPF031061.3E-26162218IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MKERAKMENT DGSASLLFAD HGHGGLSDFV FSEFDRSMMA GSSGFMELLG FHQDSSGPSL  60
FDVPLQPPTS NAMESSSEVV NPPATPNSSS ISSASNNEGL NNNNEEEEQQ VKAKVEDEGV  120
ETQEQEEHQK TKKQLKAKKT NEKRQRQPRV AFMTKSEVDH LEDGYRWRKY GQKAVKNSPF  180
PRSYYRCTSA SCNVKKRVER SVTDPSIVMT TYEGQHNHMS PVMPRSILAG VTHPPAGATA  240
TAFSVPAMPG ASLTQHHAHH YQLQSYANNW SMSNNSAVVP SSGSPNAAVL LNKRRFCSPG  300
PSNFLADNGL LQDMVPSHVL KEEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-29151221777Probable WRKY transcription factor 4
2lex_A3e-29151221777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H00996.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010069824.10.0PREDICTED: probable WRKY transcription factor 23
SwissprotO229008e-63WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A059AXB40.0A0A059AXB4_EUCGR; WRKY transcription factor
STRINGXP_010069824.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61522647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.13e-54WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]