PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H01009.1.p
Common NameEUGRSUZ_H01009
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 433aa    MW: 49081.7 Da    PI: 7.8325
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H01009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1954.8e-60853452266
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalkl....fsevsP 89 
                        +lLl++Ae v ++++ +a++lL+  + las++++p qR++ +f+eAL+ r+ r   e+ ++++++ ++ k  s+++  +++l     +   P
  Eucgr.H01009.1.p  85 AQLLLAAAEKVGDRQFDCASRLLSYCELLASKRASPAQRIVLHFVEALRDRIDR---ETGRSISMKGAEGKAgSISRCLSTNLttlkMHAHLP 174
                       699***************************************************...55555555555544445555555555566889999* PP

              GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                       + +++++ta q I e + +++r+H iD++i  G+QW  ++qaLa+R+++p   l+iT+vgs   +++e++ee g+rL ++Ae++++pf+f+v+
  Eucgr.H01009.1.p 175 FSQVTQFTALQVIIEHTVSATRIHLIDLQIRSGIQWTVFMQALAERKGDPVeLLKITAVGS---VDRENIEEAGKRLGSIAESMKIPFSFQVV 264
                       ***********************************************7776599*******...79**************************9 PP

              GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                          +le+++ e + ++ gEa+aV   l l ++ ++++sle+    +++++++l+P v+v++e ea+hns+sF++rf+eal +ysa
  Eucgr.H01009.1.p 265 FLPNLEEIREELFILEDGEAIAVYAPLVLRTMIARPTSLEK----LISVLRNLNPSVMVMTEVEANHNSPSFVARFIEALFFYSA 345
                       999*****999999999************************....**************************************98 PP
2GRAS39.58.4e-13348430293374
              GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       +i+n+v++eg er+ r  + + Wr+ + +  + ++++s+     a+l+ +++  ++  +++ + ++l+ gWk+ p++s+SaW+
  Eucgr.H01009.1.p 348 RIRNIVSMEGHERVVRSVKINVWRAFFVRYRMAEIEFSDASLYHAHLVAKQFTcERFCTLDRDGNCLLVGWKGTPMFSLSAWK 430
                       79***************************************************88878999*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098532.82458432IPR005202Transcription factor GRAS
PfamPF035141.6E-5785345IPR005202Transcription factor GRAS
PfamPF035142.9E-10348430IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MASLELLSNY WTVLKRSKRD EPREPNREVP VGLPKLSTEE IMRVAGTRYI QFQDQRDDCF  60
SLLTHPYGPA FSGLSEEDLK EVELAQLLLA AAEKVGDRQF DCASRLLSYC ELLASKRASP  120
AQRIVLHFVE ALRDRIDRET GRSISMKGAE GKAGSISRCL STNLTTLKMH AHLPFSQVTQ  180
FTALQVIIEH TVSATRIHLI DLQIRSGIQW TVFMQALAER KGDPVELLKI TAVGSVDREN  240
IEEAGKRLGS IAESMKIPFS FQVVFLPNLE EIREELFILE DGEAIAVYAP LVLRTMIARP  300
TSLEKLISVL RNLNPSVMVM TEVEANHNSP SFVARFIEAL FFYSAYSRIR NIVSMEGHER  360
VVRSVKINVW RAFFVRYRMA EIEFSDASLY HAHLVAKQFT CERFCTLDRD GNCLLVGWKG  420
TPMFSLSAWK FR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-2511443033375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H01009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018715744.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A059AWG80.0A0A059AWG8_EUCGR; Uncharacterized protein
STRINGXP_010026091.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16533913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-44RGA-like 1