PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H01071.1.p
Common NameEUGRSUZ_H01071, LOC104456720
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GATA
Protein Properties Length: 123aa    MW: 13338.4 Da    PI: 10.1264
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H01071.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.42e-18840133
              GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33
                      C+ C+tt Tp+WR gp g+++LCnaCG++yrk+
  Eucgr.H01071.1.p  8 CVECRTTRTPMWRGGPAGPRSLCNACGIKYRKR 40
                      *******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.7E-12253IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.255238IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.9E-12541No hitNo description
Gene3DG3DSA:3.30.50.108.4E-15641IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.00E-11843No hitNo description
PfamPF003203.1E-16840IPR000679Zinc finger, GATA-type
PROSITE patternPS003440833IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MKVVDRHCVE CRTTRTPMWR GGPAGPRSLC NACGIKYRKR SRGLLGADKK GFKNTPAAAA  60
AATNNDRIEG GLADMVKQGL VNPAAKTESE KNRAMTGEMR WRLREEEEAA ILLMALSCDV  120
FG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H01071.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010069875.11e-85PREDICTED: GATA transcription factor 16
TrEMBLA0A059AWY82e-84A0A059AWY8_EUCGR; Uncharacterized protein
STRINGXP_010069875.14e-85(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17347611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.17e-17GATA transcription factor 23