PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H01190.1.p
Common NameEUGRSUZ_H01190
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 607aa    MW: 66453.3 Da    PI: 8.7566
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H01190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-0585107123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++C+k F r  nL+ H r H
  Eucgr.H01190.1.p  85 FVCEICNKGFQRDQNLQLHRRGH 107
                       89*******************88 PP
2zf-C2H215.35.7e-05161183123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC +C+k +  +s+ k H++t+
  Eucgr.H01190.1.p 161 WKCDKCSKKYAVQSDWKAHQKTC 183
                       58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.6E-884107No hitNo description
Gene3DG3DSA:3.30.160.602.2E-584107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01785107IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94985107IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
SMARTSM0035577126156IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-5149182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.6E-8156182No hitNo description
SMARTSM0035594161181IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MSNFTGEEGS FSSGNTGEEV HQHEKQQLQG HLHGSNSQPS STINDSSSTS QQQPVKKKRN  60
LPGTPDPNAE VVALSPTTLM ARNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLRQRQPNE  120
AKKRVYICPE PTCVHHNPAR ALGDLTGIKK HYSRKHGEKK WKCDKCSKKY AVQSDWKAHQ  180
KTCGTREYKC DCGTIFSRRD SFITHRAFCD ALAEENNKVN QGLHQQMPNH DLMPSSMPMI  240
NTNTSSSNST MFLNDFNPTL DSKNPLKSLP QNLVPMPFKP NANNLSSMSV MSPPVMFSTT  300
SGTLFGSLRG NTISSSSSLQ LSSNTTSSGF NYLQEAKAGG GGLLAAGSAS SAHMSATALL  360
QKAAQMGASA SNSINPPMMH QKSCMAGPDQ QQPQLIPIGS APPLPIRPSS MSPNNMDTAS  420
FNHHPHHGFQ SPPPLPHPDQ FNPLLQKSNR HDHHINPMTH VMESANAMMS SEMGMFSSMF  480
VGGTDHHNMK STPSVVVDHE DSSSTSFGQG RTPSEKNVPI GSMMFGGNSN NNNSSSNGKN  540
DGVTLLDFLG LEESRHVGNL HEQQQQQQQR MVMEGMSQQR LPAMTGHFAQ QLSHAESAME  600
KPIWDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-34157220366Zinc finger protein JACKDAW
5b3h_F4e-34157220366Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H01190.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010026140.10.0PREDICTED: protein indeterminate-domain 2
SwissprotQ9SCQ61e-108IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A059AX310.0A0A059AX31_EUCGR; Uncharacterized protein
STRINGXP_010026140.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15443818
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.13e-94C2H2 family protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]